Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015340m.g Eutrema salsugineum HOM05D005326 ORTHO05D006734 1.8e-87 325.9 160 100.0
Thhalv10010556m.g Eutrema salsugineum HOM05D005326 ORTHO05D006734 1.5e-65 253.1 172 74.4
Aa31LG4G16050 Aethionema arabicum HOM05D005326 ORTHO05D006734 9.5e-65 250.4 172 73.8
CARHR155770 Cardamine hirsuta HOM05D005326 ORTHO05D006734 1.1e-63 246.9 172 72.1
AL8G35090 Arabidopsis lyrata HOM05D005326 ORTHO05D006734 2.3e-63 245.7 172 75.0
AT3G47120 Arabidopsis thaliana HOM05D005326 ORTHO05D006734 2.0e-62 242.7 172 71.5
Sp5g14620 Schrenkiella parvula HOM05D005326 ORTHO05D006734 2.0e-62 242.7 172 72.7
THA.LOC104810721 Tarenaya hassleriana HOM05D005326 ORTHO05D006734 9.8e-62 240.4 175 70.9
Cpa.g.sc112.33 Carica papaya HOM05D005326 ORTHO05D006734 1.3e-61 240.0 167 71.9
AL5G26380 Arabidopsis lyrata HOM05D005326 ORTHO05D006734 1.4e-60 236.5 172 70.3
BcaB01g00945 Brassica carinata HOM05D005326 ORTHO05D006734 7.0e-60 234.2 170 70.0
C03p71400 Brassica napus HOM05D005326 ORTHO05D006734 2.1e-59 232.6 170 68.8
BolC3t19423H Brassica oleracea HOM05D005326 ORTHO05D006734 2.1e-59 232.6 170 68.8
BraA06t25116Z Brassica rapa HOM05D005326 ORTHO05D006734 3.5e-59 231.9 170 68.8
SGA_v2.0_scaffold89G27368 Striga asiatica HOM05D005326 ORTHO05D006734 3.5e-59 231.9 172 67.4
A06p20410 Brassica napus HOM05D005326 ORTHO05D006734 7.8e-59 230.7 170 68.2
SGA_v2.0_scaffold16G07793 Striga asiatica HOM05D005326 ORTHO05D006734 1.0e-58 230.3 172 66.9
Carub.0005s1334 Capsella rubella HOM05D005326 ORTHO05D006734 2.3e-58 229.2 172 68.6
Migut.N00441 Erythranthe guttata HOM05D005326 ORTHO05D006734 6.6e-58 227.6 172 66.9
Actinidia34453 Actinidia chinensis HOM05D005326 ORTHO05D006734 1.5e-57 226.5 172 67.4
LjContig00155g0006083 Lotus japonicus HOM05D005326 ORTHO05D006734 7.3e-57 224.2 167 67.7
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 2.1e-56 222.6 167 67.7
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 2.1e-56 222.6 167 67.7
Sed0006470 Sechium edule HOM05D005326 ORTHO05D006734 1.1e-55 220.3 165 68.5
FAN25G3125 Fragaria x ananassa HOM05D005326 ORTHO05D006734 2.3e-55 219.2 167 67.1
FAN16G2933 Fragaria x ananassa HOM05D005326 ORTHO05D006734 3.1e-55 218.8 167 67.1
Thhalv10011154m.g Eutrema salsugineum HOM05D005326 ORTHO05D006734 4.0e-55 218.4 143 77.6
CSS0031446 Camellia sinensis var. sinensis HOM05D005326 ORTHO05D006734 5.2e-55 218.0 172 65.7
FvH4_3g38440 Fragaria vesca HOM05D005326 ORTHO05D006734 5.2e-55 218.0 167 66.5
FAN11G3572 Fragaria x ananassa HOM05D005326 ORTHO05D006734 5.2e-55 218.0 167 66.5
FAN21G1851 Fragaria x ananassa HOM05D005326 ORTHO05D006734 5.2e-55 218.0 167 66.5
Ciclev10028940m.g Citrus clementina HOM05D005326 ORTHO05D006734 8.9e-55 217.2 176 64.8
TWI79G0029 Tripterygium wilfordii HOM05D005326 ORTHO05D006734 2.0e-54 216.1 168 67.3
Hund18851 Selenicereus undatus HOM05D005326 ORTHO05D006734 2.6e-54 215.7 172 65.1
Manes.02G120400 Manihot esculenta HOM05D005326 ORTHO05D006734 4.4e-54 214.9 167 67.7
vmacro14591 Vaccinium macrocarpon HOM05D005326 ORTHO05D006734 9.9e-54 213.8 172 64.0
EL10Ac7g16152 Beta vulgaris HOM05D005326 ORTHO05D006734 1.3e-53 213.4 172 65.7
Lj2A1080T48 Lonicera japonica HOM05D005326 ORTHO05D006734 1.7e-53 213.0 172 63.4
Sabra09G0032400 Salix brachista HOM05D005326 ORTHO05D006734 1.7e-53 213.0 165 67.3
Sc21g0006290 Simmondsia chinensis HOM05D005326 ORTHO05D006734 1.7e-53 213.0 172 65.1
ClCG02G019610 Citrullus lanatus HOM05D005326 ORTHO05D006734 2.2e-53 212.6 165 66.7
Potri.009G044900 Populus trichocarpa HOM05D005326 ORTHO05D006734 2.2e-53 212.6 165 66.7
Cc10_g11040 Coffea canephora HOM05D005326 ORTHO05D006734 2.9e-53 212.2 172 64.5
MD03G1072000 Malus domestica HOM05D005326 ORTHO05D006734 2.9e-53 212.2 176 64.2
Ah.08g221100 Amaranthus hybridus HOM05D005326 ORTHO05D006734 4.9e-53 211.5 170 65.9
CANSAT54G2601 Cannabis sativa HOM05D005326 ORTHO05D006734 6.4e-53 211.1 165 66.1
Hma1.2p1_0227F.1_g096450 Hydrangea macrophylla HOM05D005326 ORTHO05D006734 6.4e-53 211.1 172 65.1
GSVIVG01024759001 Vitis vinifera HOM05D005326 ORTHO05D006734 6.4e-53 211.1 167 64.7
MELO3C025859.2 Cucumis melo HOM05D005326 ORTHO05D006734 8.3e-53 210.7 165 66.7
HanXRQChr08g0229511 Helianthus annuus HOM05D005326 ORTHO05D006734 1.4e-52 209.9 172 64.5
Rhsim01G0236200 Rhododendron simsii HOM05D005326 ORTHO05D006734 2.4e-52 209.1 172 64.0
Dinv28633 Davidia involucrata HOM05D005326 ORTHO05D006734 3.2e-52 208.8 172 63.4
Pp3c19_15660 Physcomitrium patens HOM05D005326 ORTHO05D006734 3.2e-52 208.8 171 63.2
CsaV3_4G026080 Cucumis sativus L. HOM05D005326 ORTHO05D006734 4.1e-52 208.4 165 65.5
Duzib168G0373 Durio zibethinus HOM05D005326 ORTHO05D006734 5.4e-52 208.0 165 64.8
Eucgr.B02263 Eucalyptus grandis HOM05D005326 ORTHO05D006734 5.4e-52 208.0 165 64.8
Nitab4.5_0002906g0020 Nicotiana tabacum HOM05D005326 ORTHO05D006734 5.4e-52 208.0 172 62.8
Medtr5g070100 Medicago truncatula HOM05D005326 ORTHO05D006734 7.1e-52 207.6 168 63.1
Thecc.09G302900 Theobroma cacao HOM05D005326 ORTHO05D006734 7.1e-52 207.6 165 64.8
QL01p038020 Quercus lobata HOM05D005326 ORTHO05D006734 9.2e-52 207.2 167 64.1
DCAR_007383 Daucus carota HOM05D005326 ORTHO05D006734 1.2e-51 206.8 172 62.8
MBI14_g28264_MAGBIO Magnolia biondii HOM05D005326 ORTHO05D006734 1.6e-51 206.5 165 64.2
MD11G1076000 Malus domestica HOM05D005326 ORTHO05D006734 1.6e-51 206.5 176 62.5
PGR102G1694 Punica granatum HOM05D005326 ORTHO05D006734 2.1e-51 206.1 165 65.5
Sopen03g038280 Solanum pennellii HOM05D005326 ORTHO05D006734 2.1e-51 206.1 172 62.8
PGSC0003DMG400005636 Solanum tuberosum HOM05D005326 ORTHO05D006734 2.1e-51 206.1 172 62.8
Lsat_1_v5_gn_9_19460 Lactuca sativa HOM05D005326 ORTHO05D006734 3.5e-51 205.3 172 62.8
Solyc03g119430.4 Solanum lycopersicum HOM05D005326 ORTHO05D006734 3.5e-51 205.3 170 62.9
Zm00001eb063190 Zea mays HOM05D005326 ORTHO05D006734 3.5e-51 205.3 165 64.8
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 4.6e-51 204.9 157 66.9
Ca_05594_v3 Cicer arietinum L. HOM05D005326 ORTHO05D006734 6.0e-51 204.5 168 63.7
Os03g0826400 Oryza sativa ssp. japonica HOM05D005326 ORTHO05D006734 6.0e-51 204.5 165 64.2
CiPaw.13G078700 Carya illinoinensis HOM05D005326 ORTHO05D006734 1.3e-50 203.4 167 62.3
Cfa011686 Carpinus fangiana HOM05D005326 ORTHO05D006734 2.3e-50 202.6 167 62.3
CDE02G0086 Ceratophyllum demersum HOM05D005326 ORTHO05D006734 2.3e-50 202.6 166 64.5
COL.COLO4_19142 Corchorus olitorius HOM05D005326 ORTHO05D006734 3.9e-50 201.8 172 59.9
Haze_24293 Corylus avellana HOM05D005326 ORTHO05D006734 3.9e-50 201.8 165 63.0
ECA247G1506 Erigeron canadensis HOM05D005326 ORTHO05D006734 8.6e-50 200.7 172 61.6
Gohir.D05G090100 Gossypium hirsutum HOM05D005326 ORTHO05D006734 8.6e-50 200.7 173 61.8
Gorai.009G092500 Gossypium raimondii HOM05D005326 ORTHO05D006734 8.6e-50 200.7 173 61.8
PSO339G2131 Papaver somniferum HOM05D005326 ORTHO05D006734 8.6e-50 200.7 165 64.2
Gohir.A05G089100 Gossypium hirsutum HOM05D005326 ORTHO05D006734 1.5e-49 199.9 175 61.1
Prupe.6G058600 Prunus persica HOM05D005326 ORTHO05D006734 1.5e-49 199.9 170 60.6
CAN.G1425.2 Capsicum annuum HOM05D005326 ORTHO05D006734 1.9e-49 199.5 170 61.2
Lalb_Chr04g0252261 Lupinus albus HOM05D005326 ORTHO05D006734 1.9e-49 199.5 167 61.1
arahy.Tifrunner.gnm1.ann1.0DMM9R Arachis hypogaea HOM05D005326 ORTHO05D006734 2.5e-49 199.1 165 63.0
arahy.Tifrunner.gnm1.ann1.L63P0H Arachis hypogaea HOM05D005326 ORTHO05D006734 2.5e-49 199.1 165 63.0
TPR.G23707 Trifolium pratense HOM05D005326 ORTHO05D006734 2.5e-49 199.1 171 61.4
Glyma.02G226100 Glycine max HOM05D005326 ORTHO05D006734 3.3e-49 198.7 167 62.3
Glyma.14G192900 Glycine max HOM05D005326 ORTHO05D006734 3.3e-49 198.7 167 62.3
PSO801G0040 Papaver somniferum HOM05D005326 ORTHO05D006734 3.3e-49 198.7 165 63.6
Phvul.008G261900 Phaseolus vulgaris HOM05D005326 ORTHO05D006734 3.3e-49 198.7 167 62.3
Psat2g058880 Pisum sativum HOM05D005326 ORTHO05D006734 3.3e-49 198.7 167 62.3
RcHm_v2.0_Chr5g0069091 Rosa chinensis HOM05D005326 ORTHO05D006734 5.6e-49 198.0 167 61.1
ATR0787G171 Amborella trichopoda HOM05D005326 ORTHO05D006734 3.6e-48 195.3 169 58.6
AagrBONN_evm.TU.Sc2ySwM_344.2701 Anthoceros agrestis HOM05D005326 ORTHO05D006734 3.6e-48 195.3 169 59.2
unitig_699.g19203 Utricularia gibba HOM05D005326 ORTHO05D006734 4.7e-48 194.9 152 66.4
PSO832G2220 Papaver somniferum HOM05D005326 ORTHO05D006734 1.8e-47 193.0 165 61.2
Actinidia23890 Actinidia chinensis HOM05D005326 ORTHO05D006734 5.2e-47 191.4 173 60.1
Nn2g13685 Nelumbo nucifera HOM05D005326 ORTHO05D006734 1.2e-46 190.3 157 62.4
CBR_g29333 Chara braunii HOM05D005326 ORTHO05D006734 4.4e-46 188.3 172 58.7
Oeu000445.1 Olea europaea HOM05D005326 ORTHO05D006734 7.6e-46 187.6 159 60.4
Peaxi162Scf00015g01035 Petunia axillaris HOM05D005326 ORTHO05D006734 1.7e-45 186.4 170 57.6
Mapoly0013s0140 Marchantia polymorpha HOM05D005326 ORTHO05D006734 2.2e-45 186.0 165 58.2
arahy.Tifrunner.gnm1.ann1.2AHU2Q Arachis hypogaea HOM05D005326 ORTHO05D006734 2.9e-45 185.7 157 62.4
arahy.Tifrunner.gnm1.ann1.V0GB02 Arachis hypogaea HOM05D005326 ORTHO05D006734 2.9e-45 185.7 157 62.4
Glyma.08G231300 Glycine max HOM05D005567 ORTHO05D005651 1.4e-44 183.3 157 61.8
Oeu045044.1 Olea europaea HOM05D005326 ORTHO05D006734 1.9e-44 183.0 175 56.0
AUR62001659 Chenopodium quinoa HOM05D005326 ORTHO05D006734 7.1e-44 181.0 172 59.3
TAR369G0957 Trochodendron aralioides HOM05D005326 ORTHO05D006734 7.1e-44 181.0 157 60.5
VMungo0647G1210 Vigna mungo HOM05D005326 ORTHO05D006734 1.2e-43 180.3 157 59.9
TPR.G17337 Trifolium pratense HOM05D005326 ORTHO05D006734 4.6e-43 178.3 155 60.0
HPP92_016949 Vanilla planifolia HOM05D005326 ORTHO05D006734 4.6e-43 178.3 165 59.4
CBR_g921 Chara braunii HOM05D005326 ORTHO05D006734 1.7e-42 176.4 172 54.1
Eucgr.L03188 Eucalyptus grandis HOM05D005326 ORTHO05D006734 3.3e-41 172.2 165 57.6
HPP92_016952 Vanilla planifolia HOM05D005326 ORTHO05D006734 1.7e-37 159.8 143 60.1
BcaB01g00943 Brassica carinata HOM05D005326 ORTHO05D006734 2.2e-37 159.5 97 79.4
TAR369G0610 Trochodendron aralioides HOM05D005326 ORTHO05D006734 4.2e-36 155.2 151 54.3
MELO3C003237.2 Cucumis melo HOM05D005326 ORTHO05D006734 1.6e-35 153.3 126 62.7
Nitab4.5_0005224g0010 Nicotiana tabacum HOM05D005326 ORTHO05D006734 3.5e-35 152.1 172 50.6
AUR62020118 Chenopodium quinoa HOM05D005326 ORTHO05D006734 2.4e-31 139.4 158 51.3
Migut.D02468 Erythranthe guttata HOM05D005326 ORTHO05D006734 2.4e-31 139.4 123 58.5
SMO164G0049 Selaginella moellendorffii HOM05D005326 ORTHO05D006734 2.2e-29 132.9 130 53.8
BcaC01g01847 Brassica carinata HOM05D005326 ORTHO05D006734 2.9e-29 132.5 147 51.7
PGSC0003DMG400035454 Solanum tuberosum HOM05D005326 ORTHO05D006734 4.9e-29 131.7 130 56.9
Cre06.g280550 Chlamydomonas reinhardtii HOM05D005326 ORTHO05D006734 1.4e-28 130.2 123 56.1
THA.LOC104815287 Tarenaya hassleriana HOM05D005326 ORTHO05D006734 3.1e-23 112.5 115 53.0
MCO15G555 Micromonas commoda HOM05D005326 ORTHO05D006734 5.8e-22 108.2 90 60.0
PRCOL_00001166 Prasinoderma coloniale HOM05D005326 ORTHO05D006734 7.6e-22 107.8 117 49.6
CSS0012209 Camellia sinensis var. sinensis HOM05D005326 ORTHO05D006734 7.4e-17 91.3 82 58.5
Eucgr.B02261 Eucalyptus grandis HOM05D005326 ORTHO05D006734 3.7e-16 89.0 77 57.1
Hma1.2p1_0464F.1_g158340 Hydrangea macrophylla HOM05D005326 ORTHO05D006734 4.8e-16 88.6 58 72.4
SEGI_30383 Sequoiadendron giganteum HOM05D005326 ORTHO05D006734 3.4e-14 82.4 59 64.4
TPR.G39602 Trifolium pratense HOM05D005326 ORTHO05D006734 1.3e-10 70.5 47 68.1


User provided reference genes

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