Gene: AT3G47120

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G47120
  • Transcript Identifier AT3G47120.2
  • Gene Type Coding gene
  • Location Chr3 : 17351334-17352769 : negative

Gene Family Information

  • ID HOM05D005326
  • #Genes/#Species 142/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G47120.2
  • uniprot Q9SD61

Descriptions

  • Description RNA recognition motif (RRM)-containing protein
  • Computational description RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding2
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0016607
IDA
Gene Ontologynuclear speck3
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0071011
IBA
Gene Ontologyprecatalytic spliceosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036855 Zinc finger, CCCH-type superfamily
IPR041367 E3 ligase, CCCH-type zinc finger
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000571 Zinc finger, CCCH-type
Mapman id Description
35.1 not assigned.annotated