Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 0.0e+00 1172.5 640 100.0
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.1e-241 840.1 659 72.8
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 9.9e-206 720.7 778 57.5
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 1.6e-203 713.4 759 57.7
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.1e-201 707.2 759 57.0
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 4.6e-195 685.3 791 55.2
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.1e-193 680.6 709 59.7
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 3.7e-192 675.6 711 59.5
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 8.4e-189 664.5 751 56.5
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 3.2e-188 662.5 709 58.5
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 2.7e-187 659.4 735 57.4
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 3.3e-185 652.5 751 56.1
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 3.0e-154 549.7 814 47.4
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.9e-103 380.9 714 39.6
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 2.9e-88 330.5 752 37.0
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.4e-74 284.3 713 34.6
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 2.6e-73 280.8 705 34.2
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 1.3e-72 278.5 775 32.5
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.1e-71 275.4 657 33.2
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 2.5e-71 274.2 715 33.6
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 5.5e-71 273.1 679 36.1
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 7.2e-71 272.7 792 31.7
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 1.6e-70 271.6 680 35.9
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 5.1e-69 266.5 686 34.3
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.1e-68 265.4 688 33.4
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.5e-68 264.2 664 34.0
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 5.7e-68 263.1 745 31.9
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.6e-67 261.5 692 33.4
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 8.2e-67 259.2 698 33.0
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 6.9e-66 256.1 682 31.4
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 6.9e-66 256.1 682 35.0
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 6.9e-66 256.1 693 33.3
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 3.4e-65 253.8 719 33.0
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 5.9e-65 253.1 731 33.0
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.3e-64 251.9 677 33.4
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.7e-64 251.5 673 34.9
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 3.8e-64 250.4 784 32.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 5.0e-64 250.0 678 35.7
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 6.5e-64 249.6 678 33.0
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 8.5e-64 249.2 707 32.1
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.4e-63 248.4 661 33.3
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.4e-63 248.4 706 33.7
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 7.2e-63 246.1 720 33.1
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 9.4e-63 245.7 660 34.1
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.6e-62 245.0 719 31.6
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 1.6e-62 245.0 681 32.6
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 2.1e-62 244.6 717 31.9
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 2.7e-62 244.2 682 32.3
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 2.7e-62 244.2 671 32.8
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 3.9e-61 240.4 696 32.2
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 4.3e-60 236.9 805 30.7
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 2.8e-59 234.2 679 32.5
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 4.8e-59 233.4 692 32.5
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 6.3e-59 233.0 698 32.8
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.4e-58 231.9 667 32.7
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 3.1e-58 230.7 740 31.1
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 3.1e-58 230.7 681 32.0
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 4.1e-58 230.3 684 31.4
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 4.5e-57 226.9 714 30.0
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 5.9e-57 226.5 434 35.5
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 2.2e-56 224.6 756 29.9
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 1.1e-55 222.2 732 30.6
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.4e-55 221.9 764 30.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 2.5e-55 221.1 681 32.5
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 2.5e-55 221.1 687 31.1
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.2e-55 220.7 376 40.2
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 5.5e-55 219.9 700 30.7
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 2.1e-54 218.0 698 30.8
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 5.1e-53 213.4 751 28.6
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 3.3e-52 210.7 670 31.2
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.3e-51 208.8 726 30.2
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 2.8e-51 207.6 670 32.8
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 8.2e-51 206.1 205 55.1
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.6e-49 201.8 577 33.6
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 2.6e-49 201.1 206 50.0
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 3.5e-49 200.7 694 29.7
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 4.5e-49 200.3 691 30.7
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 1.0e-48 199.1 710 29.9
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.3e-48 198.7 733 28.9
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 5.0e-48 196.8 653 30.8
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.9e-47 194.9 684 28.9
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 1.9e-47 194.9 636 30.7
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 3.2e-47 194.1 420 36.7
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 7.2e-47 193.0 688 30.2
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 7.2e-47 193.0 700 30.1
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 9.4e-47 192.6 636 31.4
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.7e-46 191.0 406 34.5
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 2.3e-45 188.0 652 28.7
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.5e-44 185.3 717 28.3
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 4.4e-44 183.7 528 32.6
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 1.7e-43 181.8 599 32.4
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 3.7e-43 180.6 209 45.9
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 6.3e-43 179.9 763 28.6
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 2.9e-40 171.0 687 29.1
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 2.9e-40 171.0 786 26.6
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 1.2e-36 159.1 225 46.2
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.4e-34 152.1 662 28.5
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 1.6e-33 148.7 652 29.4
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 9.5e-31 139.4 134 55.2
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.2e-30 139.0 147 51.7
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 1.5e-28 132.1 93 65.6
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 2.0e-28 131.7 90 76.7
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 2.0e-28 131.7 90 76.7
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 4.4e-28 130.6 99 64.6
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.1e-26 125.9 327 32.7
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 1.0e-24 119.4 198 38.9
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.3e-24 118.2 148 43.2
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 8.6e-24 116.3 215 34.9
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 1.9e-23 115.2 88 71.6
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 1.4e-21 109.0 188 36.7
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 1.2e-20 105.9 680 26.8
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.5e-20 105.5 112 49.1
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 4.3e-15 87.4 442 27.8
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 1.2e-12 79.3 234 33.3
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 3.4e-12 77.8 74 56.8
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 5.8e-12 77.0 58 63.8
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 5.4e-10 70.5 54 53.7
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 5.4e-10 70.5 487 23.6
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 3.5e-09 67.8 69 53.6
Cre14.g633400 Chlamydomonas reinhardtii HOM05D006136 ORTHO05D007244 6.0e-09 67.0 115 35.7
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.1e-07 62.8 217 31.8
A02p07950 Brassica napus HOM05D006136 ORTHO05D007244 4.7e-06 57.4 31 87.1
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 4.7e-06 57.4 150 30.7
CARHR256340 Cardamine hirsuta HOM05D006136 ORTHO05D007244 6.2e-06 57.0 51 58.8


User provided reference genes

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