Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10009652m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 1.4e-53 212.6 102 100.0
AL1G28000 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 9.1e-37 156.8 101 74.3
AT4G00420 Arabidopsis thaliana HOM05D000399 ORTHO05D010012 2.9e-35 151.8 101 71.3
Sp1g14150 Schrenkiella parvula HOM05D000399 ORTHO05D010012 3.8e-35 151.4 95 74.7
Carub.0001s1565 Capsella rubella HOM05D000399 ORTHO05D010012 4.7e-33 144.4 102 66.7
BraA06t24361Z Brassica rapa HOM05D002847 ORTHO05D003155 1.0e-27 126.7 81 75.3
BcaC05g30483 Brassica carinata HOM05D000399 ORTHO05D010012 1.3e-27 126.3 100 67.0
BolC5t30140H Brassica oleracea HOM05D002847 ORTHO05D003155 1.7e-27 125.9 82 74.4
C05p14090 Brassica napus HOM05D002847 ORTHO05D003155 3.8e-27 124.8 82 73.2
A06p11910 Brassica napus HOM05D002847 ORTHO05D003155 6.5e-27 124.0 81 74.1
Aa31LG7G440 Aethionema arabicum HOM05D000399 ORTHO05D010012 2.5e-26 122.1 104 60.6
CARHR016360 Cardamine hirsuta HOM05D000399 ORTHO05D010012 1.0e-24 116.7 87 63.2
THA.LOC104812446 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 1.5e-23 112.8 89 57.3
THA.LOC104813580 Tarenaya hassleriana HOM05D000399 ORTHO05D010012 6.3e-22 107.5 86 55.8
arahy.Tifrunner.gnm1.ann1.E6VFRG Arachis hypogaea HOM05D000399 ORTHO05D010012 3.1e-21 105.1 91 48.4
Thhalv10019137m.g Eutrema salsugineum HOM05D000399 ORTHO05D010012 4.1e-21 104.8 82 59.8
A02p23280 Brassica napus HOM05D000399 ORTHO05D010012 1.6e-20 102.8 93 54.8
BraA02t07324Z Brassica rapa HOM05D000399 ORTHO05D010012 1.6e-20 102.8 93 54.8
BcaC03g15940 Brassica carinata HOM05D000399 ORTHO05D010012 2.7e-20 102.1 80 58.8
C02p37020 Brassica napus HOM05D000399 ORTHO05D010012 2.7e-20 102.1 80 58.8
BolC2t09718H Brassica oleracea HOM05D000134 ORTHO05D002396 2.7e-20 102.1 80 58.8
Gohir.A09G091200 Gossypium hirsutum HOM05D000399 ORTHO05D010012 4.5e-20 101.3 88 50.0
BcaB05g25237 Brassica carinata HOM05D000399 ORTHO05D010012 5.9e-20 100.9 83 55.4
Aa31LG4G930 Aethionema arabicum HOM05D000399 ORTHO05D010012 7.8e-20 100.5 79 58.2
BolC6t40403H Brassica oleracea HOM05D000134 ORTHO05D002396 1.7e-19 99.4 83 57.8
Sp5g35110 Schrenkiella parvula HOM05D000399 ORTHO05D010012 1.7e-19 99.4 93 51.6
Duzib160G0247 Durio zibethinus HOM05D000399 ORTHO05D010012 2.3e-19 99.0 80 55.0
AL2G40790 Arabidopsis lyrata HOM05D000399 ORTHO05D010012 3.8e-19 98.2 83 53.0
CARHR073870 Cardamine hirsuta HOM05D000399 ORTHO05D010012 5.0e-19 97.8 82 54.9
Gorai.006G107400 Gossypium raimondii HOM05D000399 ORTHO05D010012 5.0e-19 97.8 88 47.7
Prupe.3G095800 Prunus persica HOM05D000399 ORTHO05D010012 8.6e-19 97.1 82 56.1
COL.COLO4_26655 Corchorus olitorius HOM05D000399 ORTHO05D010012 2.5e-18 95.5 83 51.8
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 2.5e-18 95.5 85 50.6
Ciclev10026528m.g Citrus clementina HOM05D000399 ORTHO05D010012 3.3e-18 95.1 82 53.7
Duzib235G0300 Durio zibethinus HOM05D000399 ORTHO05D010012 3.3e-18 95.1 80 51.2
Nitab4.5_0001454g0050 Nicotiana tabacum HOM05D000399 ORTHO05D010012 9.5e-18 93.6 84 52.4
Carub.0002s2691 Capsella rubella HOM05D000399 ORTHO05D010012 1.2e-17 93.2 103 45.6
CAN.G407.44 Capsicum annuum HOM05D000399 ORTHO05D010012 1.2e-17 93.2 89 51.7
Cpa.g.sc10.115 Carica papaya HOM05D000399 ORTHO05D010012 1.2e-17 93.2 83 48.2
QL05p034335 Quercus lobata HOM05D000399 ORTHO05D010012 1.2e-17 93.2 85 50.6
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.6e-17 92.8 91 47.3
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 2.1e-17 92.4 82 45.1
Actinidia18233 Actinidia chinensis HOM05D000399 ORTHO05D010012 2.8e-17 92.0 80 45.0
Hma1.2p1_0135F.1_g061800 Hydrangea macrophylla HOM05D000399 ORTHO05D010012 3.6e-17 91.7 84 51.2
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 6.1e-17 90.9 85 45.9
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 1.0e-16 90.1 84 51.2
Thecc.06G038100 Theobroma cacao HOM05D000399 ORTHO05D010012 1.0e-16 90.1 83 49.4
Eucgr.J03093 Eucalyptus grandis HOM05D000399 ORTHO05D010012 2.3e-16 89.0 80 48.8
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 3.0e-16 88.6 92 45.7
Potri.003G179700 Populus trichocarpa HOM05D000399 ORTHO05D010012 5.2e-16 87.8 85 49.4
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 5.2e-16 87.8 85 49.4
Haze_19295 Corylus avellana HOM05D000399 ORTHO05D000304 6.8e-16 87.4 91 47.3
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 6.8e-16 87.4 80 50.0
Manes.04G105300 Manihot esculenta HOM05D000399 ORTHO05D010012 1.2e-15 86.7 81 49.4
TPR.G19174 Trifolium pratense HOM05D000399 ORTHO05D010012 1.2e-15 86.7 99 38.4
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.5e-15 86.3 81 49.4
ClCG07G012380 Citrullus lanatus HOM05D000399 ORTHO05D010012 1.5e-15 86.3 84 45.2
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 2.6e-15 85.5 85 49.4
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 2.6e-15 85.5 85 49.4
Cfa001902 Carpinus fangiana HOM05D000399 ORTHO05D010012 3.4e-15 85.1 91 42.9
Hma1.2p1_0182F.1_g080650 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 3.4e-15 85.1 85 50.6
TWI18G0904 Tripterygium wilfordii HOM05D000399 ORTHO05D010012 3.4e-15 85.1 83 51.8
MELO3C010254.2 Cucumis melo HOM05D000399 ORTHO05D000304 4.4e-15 84.7 88 44.3
Phvul.005G180800 Phaseolus vulgaris HOM05D000399 ORTHO05D010012 4.4e-15 84.7 91 39.6
vmacro19037 Vaccinium macrocarpon HOM05D000399 ORTHO05D010012 4.4e-15 84.7 76 48.7
PGR142G0104 Punica granatum HOM05D000399 ORTHO05D000304 5.8e-15 84.3 89 42.7
Cpa.g.sc12.176 Carica papaya HOM05D000399 ORTHO05D010012 7.5e-15 84.0 81 45.7
CsaV3_1G028590 Cucumis sativus L. HOM05D000399 ORTHO05D000304 7.5e-15 84.0 92 44.6
PSO832G3766 Papaver somniferum HOM05D000399 ORTHO05D000304 7.5e-15 84.0 84 47.6
Psat5g304480 Pisum sativum HOM05D000399 ORTHO05D010012 7.5e-15 84.0 92 41.3
Ca_01025_v3 Cicer arietinum L. HOM05D000263 ORTHO05D000213 9.8e-15 83.6 84 41.7
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.3e-14 83.2 83 45.8
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 1.3e-14 83.2 90 41.1
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 2.2e-14 82.4 80 51.2
QL02p091746 Quercus lobata HOM05D000399 ORTHO05D010012 2.2e-14 82.4 85 47.1
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 2.9e-14 82.0 82 47.6
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 2.9e-14 82.0 82 47.6
Actinidia38350 Actinidia chinensis HOM05D000399 ORTHO05D000304 3.7e-14 81.6 85 42.4
Manes.11G064002 Manihot esculenta HOM05D000399 ORTHO05D010012 3.7e-14 81.6 83 43.4
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.7e-14 81.6 84 45.2
AUR62011271 Chenopodium quinoa HOM05D000399 ORTHO05D000304 4.9e-14 81.3 82 48.8
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 4.9e-14 81.3 82 48.8
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 6.4e-14 80.9 82 47.6
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 6.4e-14 80.9 85 44.7
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 6.4e-14 80.9 85 45.9
Sopen03g036060 Solanum pennellii HOM05D000399 ORTHO05D010012 1.1e-13 80.1 73 52.1
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 1.1e-13 80.1 75 52.0
FAN15G2526 Fragaria x ananassa HOM05D032538 ORTHO05D010012 1.4e-13 79.7 78 48.7
Glyma.15G004500 Glycine max HOM05D000399 ORTHO05D010012 1.8e-13 79.3 82 43.9
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.4e-13 79.0 90 41.1
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.4e-13 79.0 80 43.8
Lj7C452G5 Lonicera japonica HOM05D000399 ORTHO05D000304 2.4e-13 79.0 88 43.2
PGR031G2642 Punica granatum HOM05D000399 ORTHO05D010012 2.4e-13 79.0 80 47.5
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 3.2e-13 78.6 82 48.8
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.2e-13 78.6 80 43.8
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.2e-13 78.6 80 43.8
VMungo1080G1791 Vigna mungo HOM05D000399 ORTHO05D010012 3.2e-13 78.6 82 42.7
MELO3C017858.2 Cucumis melo HOM05D000399 ORTHO05D010012 4.1e-13 78.2 83 41.0
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 5.4e-13 77.8 90 42.2
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 5.4e-13 77.8 88 45.5
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 7.0e-13 77.4 84 40.5
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 7.0e-13 77.4 88 45.5
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 7.0e-13 77.4 80 42.5
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 7.0e-13 77.4 80 47.5
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 9.2e-13 77.0 85 44.7
Os09g0416500 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D010012 1.6e-12 76.3 83 42.2
Psat4g034160 Pisum sativum HOM05D000399 ORTHO05D000304 1.6e-12 76.3 80 48.8
Sc08g0005100 Simmondsia chinensis HOM05D000399 ORTHO05D010012 1.6e-12 76.3 80 42.5
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 2.7e-12 75.5 78 48.7
CsaV3_4G001760 Cucumis sativus L. HOM05D000399 ORTHO05D010012 2.7e-12 75.5 83 39.8
HanXRQChr12g0356941 Helianthus annuus HOM05D000399 ORTHO05D000304 2.7e-12 75.5 80 45.0
SGA_v2.0_scaffold5G02750 Striga asiatica HOM05D000399 ORTHO05D010012 2.7e-12 75.5 92 42.4
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 3.5e-12 75.1 84 45.2
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 3.5e-12 75.1 85 44.7
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 3.5e-12 75.1 85 43.5
Sed0016429 Sechium edule HOM05D000399 ORTHO05D010012 3.5e-12 75.1 84 40.5
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 4.6e-12 74.7 83 44.6
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 4.6e-12 74.7 80 46.2
Medtr4g116860 Medicago truncatula HOM05D000399 ORTHO05D000304 4.6e-12 74.7 80 43.8
ATR0629G135 Amborella trichopoda HOM05D000399 ORTHO05D000304 6.0e-12 74.3 81 43.2
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.0e-12 74.3 91 42.9
Cpa.g.sc397.6 Carica papaya HOM05D000361 ORTHO05D008498 7.8e-12 73.9 78 50.0
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 7.8e-12 73.9 80 46.2
Ah.09g226570 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.0e-11 73.6 88 45.5
Thhalv10012426m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.3e-11 73.2 85 42.4
Lj3g0003967 Lotus japonicus HOM05D000399 ORTHO05D010012 1.3e-11 73.2 84 39.3
HPP92_005311 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.3e-11 73.2 80 42.5
Zm00001eb426330 Zea mays HOM05D000399 ORTHO05D000304 1.3e-11 73.2 80 40.0
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.7e-11 72.8 80 45.0
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.7e-11 72.8 91 41.8
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.7e-11 72.8 91 41.8
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 1.7e-11 72.8 80 45.0
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 1.7e-11 72.8 85 45.9
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 1.7e-11 72.8 88 40.9
Glyma.17G104100 Glycine max HOM05D000399 ORTHO05D000304 2.3e-11 72.4 80 45.0
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 2.3e-11 72.4 78 43.6
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 3.0e-11 72.0 80 43.8
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 3.9e-11 71.6 81 46.9
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 5.0e-11 71.2 80 43.8
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.0e-11 71.2 78 43.6
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 8.6e-11 70.5 80 42.5
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 8.6e-11 70.5 91 40.7
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 8.6e-11 70.5 82 43.9
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 8.6e-11 70.5 80 47.5
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.1e-10 70.1 80 47.5
CDE08G0493 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.5e-10 69.7 82 41.5
A10p19620 Brassica napus HOM05D000399 ORTHO05D000304 1.9e-10 69.3 79 44.3
BraA10t44037Z Brassica rapa HOM05D000399 ORTHO05D000304 1.9e-10 69.3 79 44.3
BcaB08g36493 Brassica carinata HOM05D000399 ORTHO05D000304 3.3e-10 68.6 79 45.6
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 3.3e-10 68.6 80 42.5
BolC9t58455H Brassica oleracea HOM05D000399 ORTHO05D000304 4.3e-10 68.2 79 44.3
C09p55870 Brassica napus HOM05D000399 ORTHO05D000304 7.3e-10 67.4 79 44.3
Sp6g24100 Schrenkiella parvula HOM05D000399 ORTHO05D000304 7.3e-10 67.4 85 40.0
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-09 66.6 81 42.0
AT5G20320 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.6e-09 66.2 85 40.0
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.6e-09 66.2 81 42.0
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.1e-09 65.9 84 40.5
Os04g0509300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 2.8e-09 65.5 80 40.0
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 3.6e-09 65.1 82 41.5
MD17G1220100 Malus domestica HOM05D000399 ORTHO05D010012 4.7e-09 64.7 54 57.4
THA.LOC104811019 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 4.7e-09 64.7 85 36.5
AL6G31870 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 8.0e-09 63.9 80 41.2
Carub.0006s1871 Capsella rubella HOM05D000399 ORTHO05D000304 8.0e-09 63.9 80 40.0
CARHR192510 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.8e-08 62.8 78 44.9
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.8e-08 62.8 97 38.1
Zm00001eb312740 Zea mays HOM05D000399 ORTHO05D010012 1.8e-08 62.8 81 40.7
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 3.1e-08 62.0 83 39.8
Nitab4.5_0006291g0070 Nicotiana tabacum HOM05D000399 ORTHO05D010012 6.8e-08 60.8 54 55.6
arahy.Tifrunner.gnm1.ann1.I9YAW2 Arachis hypogaea HOM05D000399 ORTHO05D010012 8.9e-08 60.5 67 38.8
arahy.Tifrunner.gnm1.ann1.F8AJCT Arachis hypogaea HOM05D000399 ORTHO05D010012 2.2e-06 55.8 59 37.3
Haze_16641 Corylus avellana HOM05D000399 ORTHO05D010012 3.7e-06 55.1 55 50.9


User provided reference genes

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