Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1881.3 937 100.0
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1822.4 934 96.4
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1822.4 934 96.4
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1798.1 934 95.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1791.9 934 94.6
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1791.9 934 94.6
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1791.9 934 94.6
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1788.1 934 94.4
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1776.9 934 94.8
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1756.5 934 92.9
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1755.7 934 93.3
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1750.7 934 93.0
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1742.2 934 92.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1719.1 948 89.8
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1631.3 941 85.8
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 945 81.4
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1552.7 944 80.9
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1550.0 943 80.7
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1550.0 945 80.7
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 942 80.8
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1549.6 944 81.0
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1548.9 944 81.0
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 945 80.5
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1546.6 943 80.9
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 943 80.8
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1544.3 945 79.6
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1540.8 943 80.0
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1539.6 944 80.2
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1538.9 942 80.8
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1536.2 947 80.0
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1530.4 942 80.3
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1528.1 939 80.2
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1528.1 947 80.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1526.9 945 80.1
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1524.6 943 79.4
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1523.1 944 79.8
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 943 78.6
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 941 80.2
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1521.9 944 80.1
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1518.8 943 79.4
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1516.9 944 79.4
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1514.2 944 79.2
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1513.0 944 79.4
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1513.0 943 79.6
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1512.7 944 79.6
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 943 79.5
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1508.8 946 78.6
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1508.4 943 79.5
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 942 79.3
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 942 79.3
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 939 79.9
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1503.8 943 79.0
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 956 78.5
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 945 79.0
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 943 78.3
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1496.9 943 78.6
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1489.9 943 77.3
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1488.8 954 77.4
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1485.7 941 77.5
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 943 77.2
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 941 77.0
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 940 76.9
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 946 77.6
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 942 77.3
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1482.2 951 76.9
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 945 77.2
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 953 76.9
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 940 77.8
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1479.2 940 76.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1479.2 935 77.4
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1478.0 941 76.6
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 936 77.8
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 951 76.9
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 942 78.0
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 958 76.5
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1474.9 937 77.5
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1474.5 943 76.7
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 943 77.7
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 947 76.9
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1472.2 943 76.6
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1471.8 953 76.6
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1471.8 941 76.8
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1471.1 952 76.3
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 950 76.3
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1468.0 946 76.4
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1464.5 942 77.3
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 952 76.4
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1460.7 949 76.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1460.3 938 77.1
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1454.9 948 76.5
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 980 73.8
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1446.8 939 77.2
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1445.3 945 75.8
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1444.1 939 77.0
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1440.6 955 75.4
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1437.9 940 76.5
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1427.5 951 75.4
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1425.2 944 76.1
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1422.9 944 75.5
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1390.9 940 73.9
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1388.6 946 72.4
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1376.3 952 69.3
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1373.2 944 69.8
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1367.1 832 80.6
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1340.1 940 70.7
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1308.5 951 67.7
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1285.4 854 74.5
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1275.8 943 69.4
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1270.8 845 75.3
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1175.2 977 60.0
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1174.5 730 78.6
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1173.7 955 61.6
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1171.8 941 64.4
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1118.2 701 78.7
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1109.7 1005 54.6
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1095.9 937 59.4
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 4.4e-295 1018.1 661 75.8
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 5.4e-293 1011.1 633 77.7
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 4.4e-271 938.3 701 65.2
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 5.9e-223 778.5 759 52.2
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 4.4e-202 709.1 463 74.5
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.8e-180 636.7 439 71.3
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 5.9e-122 443.0 303 69.0
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 2.7e-111 407.5 631 39.5
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 6.7e-110 402.9 1308 25.1
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 4.2e-80 303.9 202 74.8
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.2e-75 286.2 207 70.5
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.9e-59 235.3 179 67.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.7e-49 202.2 300 40.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.5e-48 199.1 107 86.0
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 2.4e-43 181.8 116 74.1
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 1.5e-37 162.5 139 60.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.9e-32 145.6 109 61.5
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.2e-28 132.1 64 90.6
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 3.1e-14 85.1 80 55.0


User provided reference genes

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