Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 4.7e-214 747.7 394 100.0
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 9.3e-154 547.4 406 74.1
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.1e-153 546.2 397 74.8
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 5.1e-144 515.0 397 72.0
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 3.1e-125 452.6 397 68.3
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 1.7e-107 393.7 407 57.7
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 5.0e-107 392.1 407 54.3
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.2e-105 387.5 395 55.9
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 1.7e-102 377.1 407 56.3
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.7e-102 377.1 402 56.5
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 4.8e-102 375.6 395 55.2
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 3.5e-100 369.4 399 54.9
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 7.7e-100 368.2 398 52.8
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.9e-99 366.3 404 55.2
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.2e-97 360.9 415 53.3
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 1.2e-97 360.9 403 53.8
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 1.2e-97 360.9 400 51.5
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 2.0e-95 353.6 399 52.4
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 7.7e-92 341.7 407 54.5
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.0e-91 341.3 408 51.2
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 2.9e-91 339.7 471 49.0
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 8.5e-91 338.2 448 50.4
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 3.6e-89 332.8 399 50.6
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.4e-88 330.9 399 50.4
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 6.8e-88 328.6 399 49.6
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.7e-86 323.9 437 49.4
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 2.8e-86 323.2 407 50.1
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.4e-85 320.9 401 52.4
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 5.5e-82 308.9 402 49.8
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.6e-81 307.4 420 51.2
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 5.7e-79 298.9 403 51.1
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 9.8e-79 298.1 424 48.1
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 2.8e-78 296.6 437 47.1
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 9.2e-77 291.6 452 44.9
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 1.7e-75 287.3 505 40.6
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.9e-75 286.6 403 48.1
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 6.6e-75 285.4 418 46.4
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 2.1e-73 280.4 405 49.1
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.0e-72 278.1 410 47.8
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 2.6e-71 273.5 395 45.8
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 5.8e-71 272.3 432 44.4
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 9.8e-71 271.6 396 46.7
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 3.7e-70 269.6 410 43.9
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 8.3e-70 268.5 409 45.5
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.4e-69 267.7 407 45.2
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-69 267.3 317 50.5
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.9e-69 267.3 399 44.9
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 5.4e-69 265.8 417 45.3
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 7.0e-69 265.4 283 51.9
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.0e-68 263.8 448 43.3
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 3.5e-68 263.1 428 43.9
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 4.6e-68 262.7 407 45.7
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 1.3e-67 261.2 403 43.4
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.3e-67 260.4 411 46.5
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 3.9e-67 259.6 402 43.5
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.5e-66 257.7 420 41.0
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.3e-66 256.5 306 49.3
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 4.3e-66 256.1 429 44.1
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 5.6e-66 255.8 416 42.8
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 5.6e-66 255.8 245 60.8
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 7.3e-66 255.4 294 54.8
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 9.5e-66 255.0 449 42.1
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.1e-65 253.8 234 60.3
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 6.2e-65 252.3 418 45.0
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 8.9e-64 248.4 428 44.4
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 2.6e-63 246.9 409 44.5
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.4e-63 246.1 283 52.7
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 2.9e-62 243.4 389 44.7
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 7.0e-61 238.8 462 38.1
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 3.5e-60 236.5 457 40.5
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 4.6e-60 236.1 547 34.6
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 2.3e-59 233.8 454 40.7
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 3.3e-58 229.9 429 41.0
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 5.6e-58 229.2 419 41.1
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 1.2e-57 228.0 396 40.4
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.8e-57 226.9 458 38.0
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 4.4e-55 219.5 451 37.5
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 4.4e-55 219.5 429 37.3
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 4.4e-55 219.5 428 40.2
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 1.7e-54 217.6 417 39.8
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.4e-53 213.8 347 40.9
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 3.5e-52 209.9 424 38.4
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 1.3e-51 208.0 429 36.1
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 1.3e-51 208.0 451 35.9
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 3.9e-51 206.5 372 41.4
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 3.9e-51 206.5 415 37.6
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 8.6e-51 205.3 287 44.6
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 8.6e-51 205.3 425 37.9
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.5e-50 204.5 427 37.5
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 8.4e-46 188.7 419 36.5
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 1.9e-45 187.6 392 37.0
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 5.6e-42 176.0 408 35.0
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 1.6e-36 157.9 418 33.7
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 3.9e-35 153.3 393 35.9
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 1.5e-34 151.4 258 40.7
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 6.9e-32 142.5 229 43.7
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.3e-30 138.3 92 67.4
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 4.2e-29 133.3 418 33.3
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 4.9e-22 109.8 94 53.2
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 2.5e-21 107.5 249 35.7
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.0e-14 85.5 56 64.3
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.0e-14 85.5 56 64.3
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.6e-12 76.6 85 60.0
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.0e-11 75.5 86 59.3
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 3.3e-10 70.5 89 48.3
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.0e-08 62.4 77 46.8
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.0e-08 62.4 77 46.8
FAN17G2523 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.0e-07 61.2 49 53.1
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 2.2e-06 57.8 256 28.9
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 5.0e-06 56.6 414 27.8


User provided reference genes

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