Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 4.4e-222 774.2 372 100.0
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 1.3e-210 736.1 372 94.9
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 5.0e-210 734.2 372 94.6
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 2.5e-209 731.9 372 94.4
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 7.5e-206 720.3 372 93.0
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 1.7e-194 682.6 341 95.6
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 2.9e-181 638.6 367 80.4
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 4.2e-180 634.8 373 78.6
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 4.2e-180 634.8 372 78.5
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 2.7e-179 632.1 375 78.4
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 1.3e-176 623.2 373 79.6
QL02p062093 Quercus lobata HOM05D006688 ORTHO05D008550 2.8e-176 622.1 395 75.7
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 1.8e-175 619.4 368 79.9
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 5.3e-175 617.8 366 80.3
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 5.3e-175 617.8 374 78.1
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 7.6e-174 614.0 367 79.6
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 9.9e-174 613.6 374 77.8
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 1.1e-172 610.1 376 77.1
Manes.03G036200 Manihot esculenta HOM05D006688 ORTHO05D008550 1.3e-170 603.2 372 76.6
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 1.1e-169 600.1 370 77.3
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 1.5e-169 599.7 370 77.0
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 4.3e-169 598.2 373 76.1
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 4.8e-168 594.7 343 79.9
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 4.8e-168 594.7 373 74.3
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 1.5e-166 589.7 377 74.8
CsaV3_1G040620 Cucumis sativus L. HOM05D006688 ORTHO05D008550 7.6e-166 587.4 366 75.1
MELO3C015492.2 Cucumis melo HOM05D006688 ORTHO05D008550 3.8e-165 585.1 366 75.1
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 8.4e-165 583.9 376 73.1
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 1.4e-164 583.2 362 77.1
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 3.2e-164 582.0 374 71.9
Lj4g0022709 Lotus japonicus HOM05D006688 ORTHO05D008550 3.9e-162 575.1 372 72.0
Aqoxy7G01159 Aquilegia oxysepala HOM05D006688 ORTHO05D008550 5.1e-162 574.7 367 74.1
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 6.7e-162 574.3 368 75.8
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 5.7e-161 571.2 373 72.9
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 1.6e-160 569.7 366 73.2
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 2.4e-159 565.8 366 71.9
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 5.3e-159 564.7 363 74.4
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 9.0e-159 563.9 414 67.1
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 1.0e-157 560.5 382 69.1
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 1.3e-157 560.1 363 74.1
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 2.2e-157 559.3 371 70.6
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 3.2e-156 555.4 371 70.1
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 1.6e-155 553.1 376 69.9
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 1.1e-153 547.0 363 72.5
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 1.1e-151 540.4 372 68.0
PSO063G5109 Papaver somniferum HOM05D006688 ORTHO05D008550 1.1e-151 540.4 371 70.4
ClCG03G015420 Citrullus lanatus HOM05D006688 ORTHO05D008550 4.1e-151 538.5 351 73.8
Nitab4.5_0001519g0100 Nicotiana tabacum HOM05D006688 ORTHO05D008550 1.2e-150 537.0 368 70.1
PSO782G0729 Papaver somniferum HOM05D006688 ORTHO05D008550 1.2e-150 537.0 371 69.8
ECA232G4161 Erigeron canadensis HOM05D006688 ORTHO05D008550 1.7e-149 533.1 368 69.0
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 2.9e-149 532.3 367 69.5
Sopen07g019540 Solanum pennellii HOM05D006688 ORTHO05D008550 3.8e-149 531.9 365 69.6
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 1.4e-148 530.0 376 68.4
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 2.7e-147 525.8 370 66.5
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 2.7e-147 525.8 369 66.7
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 1.8e-146 523.1 372 67.2
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 3.0e-146 522.3 369 66.4
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 8.8e-146 520.8 365 69.0
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 8.8e-146 520.8 369 66.1
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 1.1e-145 520.4 369 66.1
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 2.0e-145 519.6 369 65.3
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 2.6e-145 519.2 373 65.7
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 4.4e-145 518.5 374 68.7
TWI32G0460 Tripterygium wilfordii HOM05D006688 ORTHO05D008550 5.7e-145 518.1 374 66.0
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 1.7e-144 516.5 370 64.3
Nitab4.5_0003606g0020 Nicotiana tabacum HOM05D006688 ORTHO05D008550 1.7e-144 516.5 362 68.5
Oeu000312.2 Olea europaea HOM05D006688 ORTHO05D008550 1.7e-144 516.5 407 63.6
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 3.7e-144 515.4 365 68.5
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 2.4e-143 512.7 368 65.8
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 2.4e-143 512.7 369 65.6
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 2.4e-143 512.7 369 65.9
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 4.1e-143 511.9 380 65.8
AUR62029033 Chenopodium quinoa HOM05D006688 ORTHO05D008550 5.3e-143 511.5 375 66.7
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 7.7e-142 507.7 368 67.9
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 2.9e-141 505.8 295 78.0
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 6.5e-141 504.6 380 64.7
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 5.5e-140 501.5 365 66.0
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 9.4e-140 500.7 369 64.8
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 8.8e-138 494.2 370 62.7
Peaxi162Scf00494g00088 Petunia axillaris HOM05D006688 ORTHO05D008550 4.4e-137 491.9 367 66.8
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 3.7e-136 488.8 294 78.2
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 3.7e-136 488.8 400 62.0
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 4.8e-136 488.4 350 67.4
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 1.8e-135 486.5 369 64.2
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 2.4e-135 486.1 364 64.0
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 3.1e-135 485.7 396 62.4
Eucgr.C03417 Eucalyptus grandis HOM05D006688 ORTHO05D008550 5.3e-135 485.0 372 64.8
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 7.7e-134 481.1 365 63.3
MD15G1210900 Malus domestica HOM05D006688 ORTHO05D008550 9.4e-132 474.2 393 61.1
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 3.3e-129 465.7 379 62.0
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 9.4e-124 447.6 314 66.9
HanXRQChr10g0319491 Helianthus annuus HOM05D006688 ORTHO05D008550 2.3e-122 443.0 378 60.1
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 6.3e-120 434.9 399 57.1
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 1.6e-115 420.2 365 60.0
CDE04G2495 Ceratophyllum demersum HOM05D006688 ORTHO05D008550 4.0e-114 415.6 344 59.3
ATR0789G107 Amborella trichopoda HOM05D006688 ORTHO05D008550 6.6e-109 398.3 350 58.0
HPP92_007651 Vanilla planifolia HOM05D006688 ORTHO05D008550 5.6e-108 395.2 450 46.9
Zm00001eb310980 Zea mays HOM05D006688 ORTHO05D008550 1.2e-107 394.0 370 52.2
CANSAT56G4018 Cannabis sativa HOM05D006688 ORTHO05D008550 6.0e-94 348.6 216 72.2
Mapoly0100s0025 Marchantia polymorpha HOM05D006688 ORTHO05D008550 4.9e-88 328.9 374 46.0
Ciclev10009613m.g Citrus clementina HOM05D006688 ORTHO05D008550 2.3e-85 320.1 182 83.0
Os09g0363600 Oryza sativa ssp. japonica HOM05D006688 ORTHO05D008550 8.4e-64 248.4 267 47.2
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 1.1e-63 248.1 150 73.3
Lj7A540G53 Lonicera japonica HOM05D006688 ORTHO05D008550 6.7e-61 238.8 176 67.6
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 9.6e-60 235.0 158 68.4
Cpa.g.sc28.145 Carica papaya HOM05D006688 ORTHO05D008550 1.4e-50 204.5 127 77.2
MCO14G146 Micromonas commoda HOM05D006688 ORTHO05D008550 5.5e-47 192.6 380 31.6
Solyc07g040780.4 Solanum lycopersicum HOM05D006688 ORTHO05D008550 1.9e-31 141.0 137 52.6
SEGI_08677 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 2.3e-29 134.0 131 50.4
Duzib168G0254 Durio zibethinus HOM05D006688 ORTHO05D008550 1.3e-27 128.3 70 88.6
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 1.2e-25 121.7 85 65.9
arahy.Tifrunner.gnm1.ann1.B17F7K Arachis hypogaea HOM05D006688 ORTHO05D008550 2.0e-25 120.9 68 75.0
Cre03.g180200 Chlamydomonas reinhardtii HOM05D006688 ORTHO05D008550 1.1e-23 115.2 442 26.2
Thhalv10023917m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 1.8e-21 107.8 117 50.4
SEGI_12408 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 7.0e-18 95.9 95 48.4
COL.COLO4_27080 Corchorus olitorius HOM05D006688 ORTHO05D008550 7.2e-15 85.9 68 69.1
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 6.5e-08 62.8 156 28.2
Eucgr.E02834 Eucalyptus grandis HOM05D001335 ORTHO05D001184 1.5e-07 61.6 138 30.4
C09p59210 Brassica napus HOM05D023048 ORTHO05D024144 3.2e-07 60.5 46 50.0
Eucgr.E02835 Eucalyptus grandis HOM05D001335 ORTHO05D001184 3.2e-07 60.5 138 29.7
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 4.2e-07 60.1 75 38.7
Eucgr.E02828 Eucalyptus grandis HOM05D001335 ORTHO05D001184 4.2e-07 60.1 138 30.4
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 4.2e-07 60.1 198 26.8
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 4.2e-07 60.1 162 25.3
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 5.5e-07 59.7 293 23.5
BcaC05g24809 Brassica carinata HOM05D023048 ORTHO05D024144 7.2e-07 59.3 46 50.0
C05p08270 Brassica napus HOM05D023048 ORTHO05D024144 7.2e-07 59.3 46 50.0
BolC3t12720H Brassica oleracea HOM05D023048 ORTHO05D024144 7.2e-07 59.3 46 50.0
PGR142G1073 Punica granatum HOM05D000836 ORTHO05D000709 7.2e-07 59.3 219 20.5
AL8G26310 Arabidopsis lyrata HOM05D001335 ORTHO05D001184 1.2e-06 58.5 104 32.7
AT5G51980 Arabidopsis thaliana HOM05D001335 ORTHO05D001184 1.2e-06 58.5 104 33.7
Carub.0008s1207 Capsella rubella HOM05D001335 ORTHO05D001184 1.2e-06 58.5 111 31.5
Eucgr.E02832 Eucalyptus grandis HOM05D001335 ORTHO05D001184 1.2e-06 58.5 137 29.9
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 1.2e-06 58.5 232 24.1
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.2e-06 58.5 202 26.7
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 1.6e-06 58.2 232 24.6
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.6e-06 58.2 176 27.3
CBR_g13009 Chara braunii HOM05D006688 ORTHO05D008550 1.6e-06 58.2 51 49.0
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 1.6e-06 58.2 218 27.1
BcaB07g31609 Brassica carinata HOM05D006688 ORTHO05D008550 2.1e-06 57.8 121 33.1
Eucgr.E02826 Eucalyptus grandis HOM05D001335 ORTHO05D001184 2.1e-06 57.8 115 30.4
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.1e-06 57.8 192 26.6
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 2.7e-06 57.4 117 26.5
BcaB08g35553 Brassica carinata HOM05D001335 ORTHO05D001184 2.7e-06 57.4 104 31.7
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 2.7e-06 57.4 146 23.3
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 2.7e-06 57.4 117 26.5
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 3.6e-06 57.0 232 24.1
CARHR264920 Cardamine hirsuta HOM05D001335 ORTHO05D001184 3.6e-06 57.0 104 32.7
CBR_g4366 Chara braunii HOM05D005323 ORTHO05D006820 3.6e-06 57.0 107 28.0
THA.LOC104811485 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 3.6e-06 57.0 151 27.2
Eucgr.E02830 Eucalyptus grandis HOM05D001335 ORTHO05D001184 4.7e-06 56.6 138 30.4
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 6.1e-06 56.2 232 23.7
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 6.1e-06 56.2 227 23.3
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 6.1e-06 56.2 289 22.5
Atru.chr1.1507 Acer truncatum HOM05D001335 ORTHO05D001184 8.0e-06 55.8 135 26.7
Thhalv10013582m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 8.0e-06 55.8 104 30.8
THA.LOC104811483 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 8.0e-06 55.8 151 26.5
TWI23G0350 Tripterygium wilfordii HOM05D001335 ORTHO05D001184 8.0e-06 55.8 107 28.0


User provided reference genes

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