Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G000100 Theobroma cacao HOM05D004823 ORTHO05D407429 1.9e-128 462.6 246 100.0
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 9.6e-16 88.2 57 71.9
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 1.3e-15 87.8 57 68.4
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 6.2e-15 85.5 57 68.4
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 8.1e-15 85.1 57 66.7
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 8.1e-15 85.1 57 66.7
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 1.8e-14 84.0 57 64.9
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 4.5e-13 79.3 57 59.6
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 5.8e-13 79.0 57 61.4
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 9.9e-13 78.2 57 57.9
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 1.7e-12 77.4 57 57.9
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 2.9e-12 76.6 57 57.9
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 4.9e-12 75.9 59 54.2
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 8.4e-12 75.1 57 57.9
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 8.4e-12 75.1 59 54.2
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 1.1e-11 74.7 57 54.4
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 1.4e-11 74.3 57 57.9
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 1.4e-11 74.3 57 56.1
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 1.4e-11 74.3 57 54.4
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 1.9e-11 73.9 57 57.9
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 1.9e-11 73.9 57 56.1
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 3.2e-11 73.2 57 54.4
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 3.2e-11 73.2 76 43.4
GSVIVG01018406001 Vitis vinifera HOM05D004823 ORTHO05D005814 3.2e-11 73.2 57 54.4
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 4.2e-11 72.8 57 54.4
Aqoxy7G00646 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 4.2e-11 72.8 57 54.4
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 4.2e-11 72.8 57 56.1
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 4.2e-11 72.8 57 52.6
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 4.2e-11 72.8 57 52.6
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 4.2e-11 72.8 57 52.6
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 4.2e-11 72.8 57 52.6
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 4.2e-11 72.8 55 56.4
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 4.2e-11 72.8 55 56.4
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 5.5e-11 72.4 57 56.1
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 7.1e-11 72.0 57 57.9
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 7.1e-11 72.0 57 52.6
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 1.2e-10 71.2 57 54.4
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 1.2e-10 71.2 57 54.4
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 1.2e-10 71.2 57 54.4
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 1.2e-10 71.2 57 50.9
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 1.6e-10 70.9 57 52.6
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 1.6e-10 70.9 59 49.2
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 1.6e-10 70.9 57 52.6
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 2.1e-10 70.5 57 52.6
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 2.1e-10 70.5 57 52.6
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 2.1e-10 70.5 57 52.6
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 2.1e-10 70.5 57 50.9
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 3.5e-10 69.7 57 54.4
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 3.5e-10 69.7 55 54.5
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 3.5e-10 69.7 57 50.9
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 4.6e-10 69.3 57 50.9
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 4.6e-10 69.3 57 50.9
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 4.6e-10 69.3 57 50.9
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 4.6e-10 69.3 57 52.6
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 4.6e-10 69.3 60 46.7
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 4.6e-10 69.3 60 46.7
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 6.0e-10 68.9 57 52.6
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 6.0e-10 68.9 60 48.3
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 7.9e-10 68.6 57 54.4
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 7.9e-10 68.6 57 54.4
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 7.9e-10 68.6 57 50.9
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 1.0e-09 68.2 57 52.6
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 1.0e-09 68.2 57 50.9
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 1.3e-09 67.8 55 54.5
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 1.8e-09 67.4 57 52.6
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 3.0e-09 66.6 57 47.4
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 3.0e-09 66.6 57 49.1
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 3.9e-09 66.2 55 52.7
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 3.9e-09 66.2 55 52.7
Atru.chr5.137 Acer truncatum HOM05D004823 ORTHO05D005814 5.1e-09 65.9 57 52.6
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 5.1e-09 65.9 57 47.4
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 5.1e-09 65.9 57 49.1
Sabra14G0140300 Salix brachista HOM05D004823 ORTHO05D005814 5.1e-09 65.9 57 50.9
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 1.1e-08 64.7 57 49.1
unitig_8.g3844 Utricularia gibba HOM05D004823 ORTHO05D005814 1.5e-08 64.3 57 50.9
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 1.5e-08 64.3 66 45.5
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 1.9e-08 63.9 57 50.9
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 1.9e-08 63.9 57 50.9
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 2.5e-08 63.5 57 43.9
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 2.5e-08 63.5 66 48.5
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 4.3e-08 62.8 57 45.6
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 4.3e-08 62.8 57 45.6
Lalb_Chr03g0040711 Lupinus albus HOM05D004823 ORTHO05D005814 5.6e-08 62.4 57 45.6
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 1.6e-07 60.8 66 47.0
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 1.6e-07 60.8 55 49.1
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 1.6e-07 60.8 57 45.6
ATR0705G006 Amborella trichopoda HOM05D004823 ORTHO05D005814 2.1e-07 60.5 59 42.4
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 2.1e-07 60.5 66 45.5
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 2.1e-07 60.5 57 45.6
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 2.8e-07 60.1 47 57.4
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 2.8e-07 60.1 57 49.1
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 8.1e-07 58.5 57 45.6
HPP92_003324 Vanilla planifolia HOM05D004823 ORTHO05D005814 8.1e-07 58.5 57 43.9
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 1.4e-06 57.8 45 53.3
SHI13671 Sapria himalayana HOM05D004823 ORTHO05D005814 5.3e-06 55.8 60 36.7
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 5.3e-06 55.8 57 43.9


User provided reference genes

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