Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.8e-243 845.5 437 100.0
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 3.1e-227 791.6 437 93.1
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 3.8e-217 758.1 437 89.7
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.1e-216 756.5 437 89.5
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.2e-216 754.6 437 89.7
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 2.0e-194 682.6 438 80.8
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.1e-190 670.2 438 79.7
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 3.1e-190 668.7 439 79.0
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 6.8e-190 667.5 436 80.0
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 3.7e-188 661.8 436 79.4
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 3.7e-188 661.8 439 78.8
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.9e-188 661.4 436 79.8
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 7.0e-187 657.5 439 78.4
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 4.3e-184 648.3 439 77.9
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 5.6e-184 647.9 439 77.4
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 4.7e-183 644.8 439 76.1
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 9.9e-181 637.1 436 76.8
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.4e-180 634.4 439 75.6
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 1.4e-179 633.3 436 76.6
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 2.7e-178 629.0 443 76.7
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 6.0e-178 627.9 443 75.6
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 8.6e-177 624.0 438 76.0
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.5e-176 623.2 438 76.3
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 3.1e-174 615.5 442 76.2
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 4.0e-174 615.1 451 74.7
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 8.9e-174 614.0 439 74.5
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 2.6e-173 612.5 436 74.1
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 2.9e-172 609.0 435 74.3
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 4.2e-171 605.1 436 72.9
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 5.4e-171 604.7 444 72.3
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 9.2e-171 604.0 437 73.7
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.6e-170 603.2 446 72.6
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 1.0e-169 600.5 436 72.2
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 4.3e-168 595.1 439 72.4
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 5.6e-168 594.7 438 72.8
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 2.1e-167 592.8 522 63.6
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 8.1e-167 590.9 438 74.4
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.1e-166 590.5 437 72.3
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.5e-165 586.6 559 59.9
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.6e-165 585.9 361 84.2
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 3.4e-165 585.5 424 73.8
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 7.6e-165 584.3 539 62.2
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 5.4e-163 578.2 438 68.9
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 3.5e-162 575.5 448 69.9
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 1.3e-161 573.5 523 64.4
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 8.7e-161 570.9 436 68.1
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 4.3e-160 568.5 411 73.5
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 3.6e-159 565.5 440 69.5
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.8e-158 563.1 432 68.8
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 2.0e-157 559.7 437 68.0
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 2.6e-157 559.3 436 68.1
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 4.5e-157 558.5 360 79.4
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.1e-155 553.9 436 68.6
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 2.7e-154 549.3 406 72.4
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.5e-154 548.9 438 70.1
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.8e-153 546.6 438 67.6
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 2.3e-153 546.2 411 72.0
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 2.1e-151 539.7 436 66.5
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 2.8e-151 539.3 359 78.0
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 2.4e-150 536.2 439 67.2
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.5e-149 531.9 412 70.9
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 4.9e-148 528.5 429 68.3
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.1e-147 527.3 375 74.4
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 5.5e-147 525.0 434 66.4
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 3.9e-145 518.8 361 74.2
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 6.7e-145 518.1 458 64.6
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.9e-144 516.5 425 67.8
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 5.7e-144 515.0 429 66.7
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 7.4e-144 514.6 324 81.8
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 9.6e-144 514.2 430 66.7
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 2.8e-143 512.7 432 66.2
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 4.8e-143 511.9 439 65.1
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.2e-141 507.3 409 65.5
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 4.2e-139 498.8 438 65.3
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 1.6e-138 496.9 355 74.1
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.6e-138 495.4 362 74.6
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.5e-136 489.6 455 62.2
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 4.3e-136 488.8 359 72.7
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 9.0e-134 481.1 406 66.3
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.7e-132 476.9 411 65.0
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 8.5e-132 474.6 432 61.3
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 3.6e-130 469.2 361 71.2
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 6.1e-130 468.4 444 58.8
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 7.9e-130 468.0 356 69.1
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 2.8e-127 459.5 359 69.4
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 2.8e-127 459.5 358 68.4
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.4e-126 457.2 439 59.9
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 3.1e-126 456.1 364 67.9
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.2e-125 454.1 436 59.9
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.2e-125 454.1 437 59.5
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 5.9e-125 451.8 446 59.9
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 1.4e-123 447.2 360 67.2
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 5.5e-123 445.3 435 56.8
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 1.8e-121 440.3 433 55.9
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 4.4e-120 435.6 359 66.9
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 3.5e-117 426.0 354 67.2
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 3.2e-115 419.5 444 57.4
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 4.2e-115 419.1 331 68.3
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 6.7e-113 411.8 393 59.0
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 8.8e-113 411.4 331 68.0
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 5.3e-110 402.1 323 65.3
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 7.7e-101 371.7 404 51.7
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.1e-99 367.9 405 55.1
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.5e-99 366.7 405 53.6
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 4.0e-97 359.4 439 48.7
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 9.1e-94 348.2 415 47.2
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 3.6e-90 336.3 365 55.9
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 1.0e-89 334.7 310 58.4
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 2.3e-84 317.0 222 73.9
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 6.8e-81 305.4 305 60.7
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 4.7e-74 282.7 325 51.4
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 2.5e-67 260.4 217 66.4
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 5.6e-67 259.2 231 64.5
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.1e-49 201.8 345 36.2
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.4e-46 191.4 328 39.9
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.6e-42 177.9 336 39.9
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 1.6e-37 161.4 186 50.5
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 3.4e-32 143.7 79 91.1
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.0e-31 142.1 79 89.9
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 4.9e-31 139.8 79 88.6
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.5e-31 139.4 79 87.3
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 9.3e-30 135.6 79 86.1
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 9.3e-30 135.6 72 93.1
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 2.7e-29 134.0 79 84.8
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 1.0e-28 132.1 79 82.3
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 6.7e-28 129.4 79 84.8
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 8.7e-28 129.0 79 82.3
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 8.7e-28 129.0 79 83.5
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 5.7e-27 126.3 79 77.2
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.3e-26 125.2 79 78.5
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 1.3e-26 125.2 79 78.5
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 2.5e-19 100.9 96 57.3
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 9.0e-17 92.4 52 90.4
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 3.0e-12 77.4 90 48.9
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 3.1e-09 67.4 71 47.9
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.5e-08 65.1 44 70.5
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 4.5e-08 63.5 30 100.0


User provided reference genes

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