Gene: Solyc06g067990.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g067990.3
  • Transcript Identifier Solyc06g067990.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 39774946-39783166 : negative

Gene Family Information

  • ID HOM05D005526
  • #Genes/#Species 139/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g067990.3.1
  • uniprot A0A3Q7HT16
  • gene_id Solyc06g067990

Descriptions

  • Description Lys-63-specific deubiquitinase BRCC36 (AHRD V3.3 *** A0A2G3C915_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006310
ISO
PLAZA Integrative OrthologyDNA recombination AT1G80210
GO:0006302
IBA
GOA Databasedouble-strand break repair
GO:0070537
IBA
GOA Databasehistone H2A K63-linked deubiquitination
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0070536
IEA
GOA Databaseprotein K63-linked deubiquitination
GO:0070536
IEA
InterProprotein K63-linked deubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031593
IBA
GOA Databasepolyubiquitin modification-dependent protein binding
GO:0008237
IBA
IEA
GOA Databasemetallopeptidase activity
GO:0008237
IEA
InterPrometallopeptidase activity
GO:0004843
IBA
IEA
GOA Databasethiol-dependent deubiquitinase
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0070122
IEA
GOA Databaseisopeptidase activity
GO:0070122
IEA
InterProisopeptidase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070531
IBA
IEA
GOA DatabaseBRCA1-A complex
GO:0070531
IEA
InterProBRCA1-A complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G80210
GO:0070552
IBA
IEA
GOA DatabaseBRISC complex
GO:0070552
IEA
InterProBRISC complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033860 Brcc36 isopeptidase
IPR040749 BRCC36, C-terminal helical domain
IPR000555 JAB1/MPN/MOV34 metalloenzyme domain
Mapman id Description
14.3.2.2 DNA damage response.homologous recombination repair (HR).BRCC DNA-damage response complex.component BRCC36