Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G099900 Theobroma cacao HOM05D008222 ORTHO05D010364 0.0e+00 1307.0 675 100.0
COL.COLO4_29620 Corchorus olitorius HOM05D008222 ORTHO05D010364 6.7e-237 824.3 691 66.7
Haze_19673 Corylus avellana HOM05D008222 ORTHO05D010364 1.9e-146 523.9 699 49.5
Dinv31739 Davidia involucrata HOM05D008222 ORTHO05D010364 1.6e-145 520.8 707 47.8
Atru.chr8.1411 Acer truncatum HOM05D008222 ORTHO05D010364 3.7e-142 509.6 738 45.7
QL07p037571 Quercus lobata HOM05D008222 ORTHO05D010364 6.3e-142 508.8 698 47.9
Cfa016663 Carpinus fangiana HOM05D008222 ORTHO05D010364 1.1e-141 508.1 710 47.6
Manes.09G049300 Manihot esculenta HOM05D008222 ORTHO05D010364 9.3e-138 495.0 699 47.5
Sabra06G0158800 Salix brachista HOM05D008222 ORTHO05D010364 2.8e-134 483.4 700 46.9
Potri.006G205800 Populus trichocarpa HOM05D008222 ORTHO05D010364 1.1e-133 481.5 698 46.1
Ciclev10011213m.g Citrus clementina HOM05D008222 ORTHO05D010364 1.2e-132 478.0 696 47.7
Cpa.g.sc104.69 Carica papaya HOM05D008222 ORTHO05D010364 2.3e-128 463.8 706 44.5
CiPaw.10G014900 Carya illinoinensis HOM05D008222 ORTHO05D010364 6.7e-128 462.2 693 45.3
TWI77G0950 Tripterygium wilfordii HOM05D008222 ORTHO05D010364 2.0e-124 450.7 714 44.3
CSS0016714 Camellia sinensis var. sinensis HOM05D008222 ORTHO05D010364 1.0e-123 448.4 721 43.1
TAR633G2678 Trochodendron aralioides HOM05D008222 ORTHO05D010364 2.5e-122 443.7 708 44.2
GSVIVG01033924001 Vitis vinifera HOM05D008222 ORTHO05D010364 1.3e-118 431.4 698 41.8
TAR636G2750 Trochodendron aralioides HOM05D008222 ORTHO05D010364 4.8e-118 429.5 706 42.8
Lj1C1035T2 Lonicera japonica HOM05D008222 ORTHO05D010364 3.7e-102 376.7 698 39.5
FAN14G0765 Fragaria x ananassa HOM05D008222 ORTHO05D010364 5.9e-100 369.4 700 39.6
FvH4_6g19810 Fragaria vesca HOM05D008222 ORTHO05D010364 1.1e-98 365.2 700 39.4
FAN05G0526 Fragaria x ananassa HOM05D008222 ORTHO05D010364 1.1e-98 365.2 701 39.4
RcHm_v2.0_Chr3g0475181 Rosa chinensis HOM05D008222 ORTHO05D010364 1.1e-98 365.2 678 38.5
FAN02G2041 Fragaria x ananassa HOM05D008222 ORTHO05D010364 7.2e-98 362.5 700 39.3
Nn6g34773 Nelumbo nucifera HOM05D008222 ORTHO05D010364 2.8e-97 360.5 710 40.3
Glyma.02G200000 Glycine max HOM05D008222 ORTHO05D010364 1.0e-96 358.6 700 40.4
FAN09G4126 Fragaria x ananassa HOM05D008222 ORTHO05D010364 3.0e-96 357.1 693 38.2
FAN05G0780 Fragaria x ananassa HOM05D008222 ORTHO05D010364 4.0e-96 356.7 700 38.0
CANSAT64G2035 Cannabis sativa HOM05D008222 ORTHO05D010364 8.8e-96 355.5 766 36.9
MBI17_g16777_MAGBIO Magnolia biondii HOM05D008222 ORTHO05D010364 3.1e-93 347.1 695 39.0
Glyma.10G076700 Glycine max HOM05D008222 ORTHO05D010364 1.5e-90 338.2 694 39.0
VMungo0720G0042 Vigna mungo HOM05D008222 ORTHO05D010364 1.2e-87 328.6 689 38.5
Phvul.007G270200 Phaseolus vulgaris HOM05D008222 ORTHO05D010364 5.7e-87 326.2 681 37.2
Oeu060355.1 Olea europaea HOM05D008222 ORTHO05D010364 1.8e-85 321.2 688 37.2
TPR.G8743 Trifolium pratense HOM05D008222 ORTHO05D010364 4.1e-85 320.1 703 38.4
DCAR_020725 Daucus carota HOM05D008222 ORTHO05D010364 2.0e-84 317.8 711 36.0
CiPaw.09G018200 Carya illinoinensis HOM05D008222 ORTHO05D010364 5.9e-84 316.2 582 41.9
Lj5g0010690 Lotus japonicus HOM05D008222 ORTHO05D010364 1.7e-83 314.7 699 37.2
Oeu010753.1 Olea europaea HOM05D008222 ORTHO05D010364 1.1e-82 312.0 699 35.2
Oeu010756.1 Olea europaea HOM05D008222 ORTHO05D010364 4.3e-82 310.1 683 35.6
MSTRG.10386 Avicennia marina HOM05D008222 ORTHO05D010364 1.2e-79 302.0 701 35.5
MD12G1033800 Malus domestica HOM05D008222 ORTHO05D010364 4.7e-73 280.0 591 37.4
Medtr1g058110 Medicago truncatula HOM05D008222 ORTHO05D010364 8.6e-67 259.2 707 35.1
Hund03869 Selenicereus undatus HOM05D008222 ORTHO05D010364 3.3e-66 257.3 769 30.9
EL10Ac7g16820 Beta vulgaris HOM05D008222 ORTHO05D010364 1.4e-64 251.9 808 29.0
Aqoxy4G02694 Aquilegia oxysepala HOM05D008222 ORTHO05D010364 1.7e-62 245.0 702 30.1
AUR62006264 Chenopodium quinoa HOM05D008222 ORTHO05D010364 9.2e-61 239.2 734 32.2
HPP92_009786 Vanilla planifolia HOM05D008222 ORTHO05D010364 5.6e-58 229.9 688 30.8
Sc20g0006580 Simmondsia chinensis HOM05D008222 ORTHO05D010364 8.1e-57 226.1 682 31.8
AUR62028514 Chenopodium quinoa HOM05D008222 ORTHO05D010364 6.4e-54 216.5 817 29.6
SGA_v2.0_scaffold184G40000 Striga asiatica HOM05D008222 ORTHO05D010364 1.5e-50 205.3 684 29.1
CDE06G1815 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 1.3e-49 202.2 679 29.7
Oeu010754.1 Olea europaea HOM05D008222 ORTHO05D010364 6.4e-46 189.9 510 32.9
CDE08G0440 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 2.5e-42 177.9 678 29.4
Os02g0536400 Oryza sativa ssp. japonica HOM05D008222 ORTHO05D010364 1.2e-39 169.1 716 26.3
ATR0772G019 Amborella trichopoda HOM05D008222 ORTHO05D010364 9.3e-37 159.5 725 26.9
SEGI_05246 Sequoiadendron giganteum HOM05D008222 ORTHO05D010364 9.3e-37 159.5 764 26.2
ECA233G4923 Erigeron canadensis HOM05D008222 ORTHO05D010364 6.7e-35 153.3 739 27.1
unitig_8.g3557 Utricularia gibba HOM05D008222 ORTHO05D010364 5.9e-23 113.6 251 31.1
Lalb_Chr02g0154681 Lupinus albus HOM05D008222 ORTHO05D010364 5.5e-21 107.1 118 50.8
A03p20610 Brassica napus HOM05D002912 ORTHO05D003191 3.1e-08 64.7 72 43.1
C03p24210 Brassica napus HOM05D002912 ORTHO05D003191 3.1e-08 64.7 72 43.1
BolC3t14815H Brassica oleracea HOM05D002912 ORTHO05D003191 3.1e-08 64.7 72 43.1
BraA03t11303Z Brassica rapa HOM05D002912 ORTHO05D003191 3.1e-08 64.7 72 43.1
Thhalv10017989m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 3.1e-08 64.7 72 43.1
Sp4g19660 Schrenkiella parvula HOM05D002912 ORTHO05D003191 3.1e-08 64.7 72 43.1
Psat6g082000 Pisum sativum HOM05D008222 ORTHO05D010364 7.0e-08 63.5 122 36.9
CARHR132250 Cardamine hirsuta HOM05D002912 ORTHO05D003191 9.1e-08 63.2 77 40.3
Migut.L01640 Erythranthe guttata HOM05D002912 ORTHO05D003191 9.1e-08 63.2 72 41.7
C05p58480 Brassica napus HOM05D002912 ORTHO05D003191 1.2e-07 62.8 82 36.6
BolC5t34499H Brassica oleracea HOM05D002912 ORTHO05D003191 1.2e-07 62.8 78 38.5
Carub.0004s1925 Capsella rubella HOM05D002912 ORTHO05D003191 1.2e-07 62.8 77 39.0
DCAR_017750 Daucus carota HOM05D002912 ORTHO05D003191 1.5e-07 62.4 72 41.7
Nitab4.5_0000914g0130 Nicotiana tabacum HOM05D002912 ORTHO05D003191 1.5e-07 62.4 72 41.7
Actinidia19735 Actinidia chinensis HOM05D002912 ORTHO05D003191 2.0e-07 62.0 77 37.7
A05p39460 Brassica napus HOM05D002912 ORTHO05D003191 2.0e-07 62.0 78 38.5
BraA05t22727Z Brassica rapa HOM05D002912 ORTHO05D003191 2.0e-07 62.0 78 38.5
THA.LOC104806511 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 2.0e-07 62.0 72 41.7
Gorai.012G091800 Gossypium raimondii HOM05D002912 ORTHO05D003191 2.6e-07 61.6 72 40.3
Carub.0003s0868 Capsella rubella HOM05D002912 ORTHO05D003191 3.4e-07 61.2 78 38.5
Gorai.002G252500 Gossypium raimondii HOM05D002912 ORTHO05D003191 3.4e-07 61.2 77 36.4
Oeu037763.2 Olea europaea HOM05D002912 ORTHO05D003191 3.4e-07 61.2 72 41.7
Aa31LG5G22680 Aethionema arabicum HOM05D002912 ORTHO05D003191 4.5e-07 60.8 72 41.7
Ah.10g033180 Amaranthus hybridus HOM05D002912 ORTHO05D003191 4.5e-07 60.8 72 38.9
COL.COLO4_05801 Corchorus olitorius HOM05D002912 ORTHO05D003191 4.5e-07 60.8 72 41.7
Duzib106G1529 Durio zibethinus HOM05D002912 ORTHO05D003191 4.5e-07 60.8 72 41.7
Glyma.03G175400 Glycine max HOM05D002912 ORTHO05D003191 4.5e-07 60.8 77 36.4
Glyma.19G176100 Glycine max HOM05D002912 ORTHO05D003191 4.5e-07 60.8 77 36.4
Gohir.D01G207400 Gossypium hirsutum HOM05D002912 ORTHO05D003191 4.5e-07 60.8 77 36.4
Peaxi162Scf00015g00272 Petunia axillaris HOM05D002912 ORTHO05D003191 4.5e-07 60.8 72 41.7
Sc20g0002330 Simmondsia chinensis HOM05D002912 ORTHO05D003191 4.5e-07 60.8 72 41.7
Migut.J00390 Erythranthe guttata HOM05D002912 ORTHO05D003191 5.9e-07 60.5 72 38.9
HanXRQChr08g0219481 Helianthus annuus HOM05D002912 ORTHO05D003191 5.9e-07 60.5 72 38.9
Oeu025612.1 Olea europaea HOM05D002912 ORTHO05D003191 5.9e-07 60.5 72 40.3
Sp3g07940 Schrenkiella parvula HOM05D002912 ORTHO05D003191 5.9e-07 60.5 78 38.5
MSTRG.5705 Avicennia marina HOM05D002912 ORTHO05D003191 7.7e-07 60.1 72 40.3
Solyc09g005980.4 Solanum lycopersicum HOM05D002912 ORTHO05D003191 7.7e-07 60.1 72 40.3
PGSC0003DMG400023919 Solanum tuberosum HOM05D002912 ORTHO05D003191 7.7e-07 60.1 72 40.3
Thecc.10G063400 Theobroma cacao HOM05D002912 ORTHO05D003191 7.7e-07 60.1 72 40.3
TPR.G36918 Trifolium pratense HOM05D002912 ORTHO05D003191 7.7e-07 60.1 72 41.7
MSTRG.19116 Avicennia marina HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 38.9
C06p21470 Brassica napus HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 41.7
BolC6t37329H Brassica oleracea HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 41.7
BraA07t29849Z Brassica rapa HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 41.7
Gohir.D13G021300 Gossypium hirsutum HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 40.3
Gorai.013G024100 Gossypium raimondii HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 40.3
Lj8C93T4 Lonicera japonica HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 38.9
Lj1g0023882 Lotus japonicus HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 41.7
Solyc05g054920.4 Solanum lycopersicum HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 40.3
Sopen05g033380 Solanum pennellii HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 40.3
PGSC0003DMG402023504 Solanum tuberosum HOM05D002912 ORTHO05D003191 1.0e-06 59.7 72 40.3
THA.LOC104823247 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 1.0e-06 59.7 78 34.6
arahy.Tifrunner.gnm1.ann1.6ZDT16 Arachis hypogaea HOM05D002912 ORTHO05D003191 1.3e-06 59.3 77 36.4
arahy.Tifrunner.gnm1.ann1.U08GD1 Arachis hypogaea HOM05D002912 ORTHO05D003191 1.3e-06 59.3 77 36.4
Lj1g0023413 Lotus japonicus HOM05D002912 ORTHO05D003191 1.3e-06 59.3 77 35.1
Actinidia13846 Actinidia chinensis HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 38.9
Aqoxy4G03099 Aquilegia oxysepala HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
AL5G34420 Arabidopsis lyrata HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
AT3G53500 Arabidopsis thaliana HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
A09p46490 Brassica napus HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
C08p28840 Brassica napus HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
BolC8t50486H Brassica oleracea HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
BraA09t40114Z Brassica rapa HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
Carub.0005s2007 Capsella rubella HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
CARHR163400 Cardamine hirsuta HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
Cc06_g03240 Coffea canephora HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 37.5
Duzib114G0437 Durio zibethinus HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 38.9
Glyma.19G176200 Glycine max HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 38.9
Gohir.A10G208800 Gossypium hirsutum HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 38.9
Gohir.D10G217100 Gossypium hirsutum HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 38.9
Gorai.011G242700 Gossypium raimondii HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 38.9
Nitab4.5_0000643g0180 Nicotiana tabacum HOM05D002912 ORTHO05D003191 1.7e-06 58.9 67 40.3
Nitab4.5_0006252g0030 Nicotiana tabacum HOM05D000419 ORTHO05D000692 1.7e-06 58.9 67 40.3
Oeu029116.1 Olea europaea HOM05D002912 ORTHO05D003191 1.7e-06 58.9 71 39.4
Rhsim05G0184800 Rhododendron simsii HOM05D002912 ORTHO05D003191 1.7e-06 58.9 77 36.4
Sp5g08840 Schrenkiella parvula HOM05D002912 ORTHO05D003191 1.7e-06 58.9 72 41.7
TWI53G0760 Tripterygium wilfordii HOM05D002912 ORTHO05D003191 1.7e-06 58.9 77 36.4
Duzib128G1379 Durio zibethinus HOM05D002912 ORTHO05D003191 2.2e-06 58.5 72 38.9
FvH4_7g20711 Fragaria vesca HOM05D002912 ORTHO05D003191 2.2e-06 58.5 72 40.3
RcHm_v2.0_Chr1g0364971 Rosa chinensis HOM05D002912 ORTHO05D003191 2.2e-06 58.5 72 40.3
THA.LOC104826998 Tarenaya hassleriana HOM05D002912 ORTHO05D003191 2.2e-06 58.5 78 35.9
Gohir.A01G218600 Gossypium hirsutum HOM05D002912 ORTHO05D003191 2.9e-06 58.2 77 35.1
Prupe.2G224200 Prunus persica HOM05D002912 ORTHO05D003191 2.9e-06 58.2 72 40.3
PGR044G0052 Punica granatum HOM05D002912 ORTHO05D003191 2.9e-06 58.2 72 40.3
EL10Ac2g03513 Beta vulgaris HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 38.9
A03p00880 Brassica napus HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 36.1
C03p01130 Brassica napus HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 36.1
BolC3t12672H Brassica oleracea HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 36.1
BraA03t09470Z Brassica rapa HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 36.1
CDE02G4187 Ceratophyllum demersum HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 37.5
CDE09G1066 Ceratophyllum demersum HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 37.5
MD12G1131700 Malus domestica HOM05D002912 ORTHO05D003191 3.8e-06 57.8 77 36.4
Rhsim03G0125000 Rhododendron simsii HOM05D002912 ORTHO05D003191 3.8e-06 57.8 72 38.9
Sabra06G0166100 Salix brachista HOM05D002912 ORTHO05D003191 3.8e-06 57.8 77 33.8
AL4G33720 Arabidopsis lyrata HOM05D002912 ORTHO05D003191 5.0e-06 57.4 81 37.0
ECA238G4642 Erigeron canadensis HOM05D002912 ORTHO05D003191 5.0e-06 57.4 72 34.7
Gohir.A06G177900 Gossypium hirsutum HOM05D002912 ORTHO05D003191 5.0e-06 57.4 72 38.9
Gohir.D06G173700 Gossypium hirsutum HOM05D002912 ORTHO05D003191 5.0e-06 57.4 72 38.9
Gorai.010G203100 Gossypium raimondii HOM05D002912 ORTHO05D003191 5.0e-06 57.4 72 38.9
Lj3C975T6 Lonicera japonica HOM05D002912 ORTHO05D003191 5.0e-06 57.4 72 38.9
QL07p045981 Quercus lobata HOM05D002912 ORTHO05D003191 5.0e-06 57.4 77 35.1
TWI74G0490 Tripterygium wilfordii HOM05D002912 ORTHO05D003191 5.0e-06 57.4 77 36.4
Lalb_Chr06g0171181 Lupinus albus HOM05D002912 ORTHO05D003191 6.5e-06 57.0 77 35.1
Os03g0285900 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 40.3
Os05g0120100 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 41.7
PSO339G4076 Papaver somniferum HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 38.9
PSO384G0018 Papaver somniferum HOM05D002912 ORTHO05D003191 6.5e-06 57.0 72 38.9
CiPaw.01G279300 Carya illinoinensis HOM05D002912 ORTHO05D003191 8.5e-06 56.6 72 38.9
DCAR_005061 Daucus carota HOM05D002912 ORTHO05D003191 8.5e-06 56.6 72 37.5
ECA248G3238 Erigeron canadensis HOM05D002912 ORTHO05D003191 8.5e-06 56.6 72 37.5
Thhalv10014414m.g Eutrema salsugineum HOM05D002912 ORTHO05D003191 8.5e-06 56.6 72 36.1
Os05g0162600 Oryza sativa ssp. japonica HOM05D002912 ORTHO05D003191 8.5e-06 56.6 74 37.8
Sed0025451 Sechium edule HOM05D002912 ORTHO05D003191 8.5e-06 56.6 72 37.5


User provided reference genes

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