Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 0.0e+00 1201.4 612 100.0
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 7.0e-310 1066.6 626 87.1
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.5e-307 1058.9 630 86.7
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.7e-295 1018.8 632 83.9
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.8e-295 1017.7 632 83.7
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 3.8e-295 1017.7 632 83.7
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 4.3e-251 871.3 631 71.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 7.2e-246 854.0 630 70.3
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 8.8e-244 847.0 629 69.2
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.7e-242 842.8 622 70.3
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.1e-241 838.6 633 69.4
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 5.3e-241 837.8 618 71.0
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.0e-239 833.6 632 69.1
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 7.2e-238 827.4 628 68.5
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.0e-236 823.5 619 69.8
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 5.7e-235 817.8 621 69.4
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.8e-234 814.7 628 67.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.8e-233 812.8 644 66.5
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.9e-230 802.7 629 66.8
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 7.2e-230 800.8 630 67.5
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 2.7e-229 798.9 638 66.9
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-228 796.6 641 66.1
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 5.7e-227 791.2 626 68.1
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 4.8e-226 788.1 640 68.6
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.1e-225 783.9 625 69.1
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.2e-224 783.5 622 68.3
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 4.5e-224 781.6 609 68.1
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 4.5e-224 781.6 631 65.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.9e-223 778.9 632 65.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-222 775.8 617 66.8
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.2e-222 775.0 617 66.8
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 8.0e-221 770.8 611 66.6
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 8.0e-221 770.8 612 66.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 8.0e-221 770.8 616 66.4
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.8e-220 769.6 629 64.9
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.8e-220 769.6 617 66.5
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.2e-220 768.1 617 66.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.5e-219 766.5 617 66.5
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 4.4e-219 765.0 612 65.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 4.9e-218 761.5 608 65.1
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 6.3e-218 761.1 598 66.4
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.4e-217 760.0 629 65.7
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 3.1e-217 758.8 625 63.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.3e-215 753.4 624 64.6
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.7e-215 753.1 638 63.0
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 6.6e-215 751.1 627 65.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 8.6e-215 750.7 615 64.4
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.6e-214 748.0 609 64.4
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 7.3e-214 747.7 636 62.4
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 9.5e-214 747.3 598 65.7
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.7e-213 745.0 636 62.4
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 6.1e-213 744.6 596 65.8
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 8.0e-213 744.2 622 64.0
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.0e-212 743.8 629 64.5
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 6.8e-212 741.1 631 64.7
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 8.9e-212 740.7 635 64.3
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 5.7e-211 738.0 628 64.5
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.7e-210 736.5 620 63.9
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.9e-210 734.9 619 63.2
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 8.3e-210 734.2 612 63.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.1e-209 731.9 615 62.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 4.1e-209 731.9 640 60.8
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.6e-208 729.9 602 64.1
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 2.0e-208 729.6 610 62.6
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 3.5e-208 728.8 599 64.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.6e-208 728.4 622 61.6
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 7.8e-208 727.6 611 62.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.3e-207 726.9 619 64.3
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.3e-207 726.9 611 65.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.7e-207 726.5 609 65.0
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.7e-207 726.5 602 64.0
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 5.0e-207 724.9 632 60.6
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.1e-206 723.8 643 61.4
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.1e-206 723.8 612 62.1
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 2.8e-205 719.2 606 64.2
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 8.0e-205 717.6 620 62.9
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.4e-204 716.8 620 62.4
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.3e-204 716.1 628 61.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.1e-204 715.7 607 63.8
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.1e-204 715.7 607 63.8
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.0e-203 713.0 629 59.9
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.4e-203 711.8 600 62.7
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 5.8e-203 711.4 630 61.1
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.9e-201 706.4 595 64.0
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 7.0e-201 704.5 612 63.4
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 7.0e-201 704.5 625 59.5
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.3e-199 700.3 620 61.3
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 3.0e-199 699.1 600 62.2
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.9e-198 696.4 605 62.6
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 9.5e-198 694.1 608 62.2
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 9.5e-198 694.1 608 62.0
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 9.5e-198 694.1 608 62.2
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.1e-197 693.0 604 62.1
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.7e-197 691.8 617 61.6
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.1e-196 690.6 614 62.1
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.5e-195 684.5 547 65.8
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 4.9e-194 681.8 604 61.6
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 4.6e-192 675.2 608 60.9
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.7e-191 673.3 608 60.7
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.7e-191 673.3 602 61.5
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 1.6e-189 666.8 505 69.5
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.5e-182 643.7 620 57.1
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 8.1e-181 637.9 528 65.2
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-177 626.3 606 57.4
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.6e-173 613.6 604 56.1
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.4e-172 610.5 549 59.9
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.3e-167 594.0 644 51.9
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 6.0e-160 568.5 581 54.6
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 4.3e-158 562.4 624 52.9
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.1e-156 556.2 607 52.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.4e-153 547.4 510 57.8
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 5.5e-153 545.4 625 52.0
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 6.7e-151 538.5 633 52.3
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 6.7e-151 538.5 605 51.4
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.1e-150 537.7 656 47.7
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.8e-149 532.3 611 50.4
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 4.2e-137 492.7 487 57.3
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 8.5e-130 468.4 500 53.2
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 7.4e-126 455.3 395 64.1
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.7e-122 444.1 509 50.9
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-119 434.5 540 49.6
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 3.1e-116 423.3 425 57.2
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 5.0e-114 416.0 411 57.4
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 5.9e-107 392.5 336 63.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 3.8e-106 389.8 653 40.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.3e-101 372.1 384 57.0
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 2.4e-100 370.5 617 38.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.4e-100 370.5 372 57.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.2e-95 352.8 431 47.1
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.5e-89 334.7 279 62.7
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.2e-86 325.1 249 65.5
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.0e-83 314.3 579 37.0
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 3.1e-79 300.4 242 64.9
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.1e-75 287.7 350 49.1
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.5e-73 281.6 382 46.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 3.3e-73 280.4 548 38.3
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.2e-70 271.9 382 45.3
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 4.3e-65 253.4 199 64.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 7.6e-62 242.7 784 29.6
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 9.9e-62 242.3 149 73.2
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 4.2e-52 210.3 396 41.7
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 4.5e-46 190.3 553 29.8
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 8.4e-45 186.0 153 62.7
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 5.1e-42 176.8 567 29.5
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-39 169.1 251 48.2
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.5e-38 163.7 185 48.1
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 4.9e-37 160.2 547 28.7
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 5.9e-22 110.2 60 81.7
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 8.5e-21 106.3 97 56.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 7.2e-20 103.2 298 32.6
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 9.7e-17 92.8 79 60.8
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.2e-13 81.6 65 70.8
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 8.0e-11 73.2 68 61.8
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 1.3e-08 65.9 38 76.3
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.1e-07 62.8 43 72.1


User provided reference genes

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