Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 3.1e-190 668.3 342 100.0
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 1.3e-159 566.6 371 80.9
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 1.5e-155 553.1 365 77.5
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.1e-154 549.3 371 75.7
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.5e-152 543.1 365 76.7
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 3.4e-136 488.8 369 69.9
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 7.1e-134 481.1 376 68.6
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 1.2e-133 480.3 373 71.6
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.6e-133 479.9 372 69.4
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 2.1e-133 479.6 370 67.6
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 3.5e-133 478.8 365 70.4
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 4.6e-133 478.4 376 67.6
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.3e-132 476.9 378 67.2
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 1.7e-132 476.5 332 74.7
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 6.6e-132 474.6 368 66.8
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 3.6e-130 468.8 363 68.6
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 6.2e-130 468.0 368 69.3
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 1.8e-129 466.5 347 71.5
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 2.4e-129 466.1 330 73.0
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 6.9e-129 464.5 364 67.0
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 6.9e-129 464.5 365 68.2
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 2.6e-128 462.6 374 66.8
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 2.6e-128 462.6 376 67.6
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.7e-127 459.9 363 67.8
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.8e-127 458.8 363 68.3
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.4e-126 456.8 363 67.8
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 2.4e-126 456.1 359 65.7
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 4.2e-126 455.3 387 63.0
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 3.5e-125 452.2 374 67.6
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 4.6e-125 451.8 371 64.2
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 4.6e-125 451.8 356 67.4
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.3e-124 450.3 399 62.4
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.7e-124 449.9 372 65.1
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 6.6e-124 448.0 372 62.6
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 6.6e-124 448.0 362 64.9
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.1e-123 447.2 381 62.5
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 3.3e-123 445.7 373 64.9
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 3.3e-123 445.7 374 63.1
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 4.3e-123 445.3 403 60.5
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 5.6e-123 444.9 368 64.7
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 5.6e-123 444.9 381 61.9
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 1.6e-122 443.4 421 60.6
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 3.6e-122 442.2 372 62.6
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 8.1e-122 441.0 359 63.8
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 1.4e-121 440.3 374 63.6
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 1.4e-121 440.3 355 64.5
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 9.0e-121 437.6 379 63.6
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 1.5e-120 436.8 375 62.4
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.5e-120 436.8 359 66.3
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 1.5e-120 436.8 365 69.3
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 2.6e-120 436.0 476 55.7
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 4.5e-120 435.3 371 62.0
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 5.8e-120 434.9 333 67.3
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 5.8e-120 434.9 383 63.7
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 9.9e-120 434.1 374 63.1
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.3e-119 433.7 379 63.9
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 1.7e-119 433.3 369 61.5
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.7e-119 433.3 378 61.4
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 2.2e-119 433.0 359 63.0
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 4.9e-119 431.8 370 61.6
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 1.1e-118 430.6 336 69.0
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 3.2e-118 429.1 370 61.4
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 5.4e-118 428.3 372 61.3
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 9.3e-118 427.6 403 58.3
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 9.3e-118 427.6 350 62.9
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 1.2e-117 427.2 350 62.9
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 1.2e-117 427.2 312 72.8
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.1e-117 426.4 358 62.6
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 7.9e-117 424.5 315 67.6
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 7.9e-117 424.5 365 66.3
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.8e-116 423.3 315 67.3
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 3.0e-116 422.5 314 71.3
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 3.0e-116 422.5 315 67.0
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 6.7e-116 421.4 349 63.0
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.5e-115 420.2 372 60.8
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 2.5e-115 419.5 346 65.0
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 4.3e-115 418.7 369 61.5
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 9.6e-115 417.5 370 63.5
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 1.3e-114 417.2 347 62.8
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.1e-114 416.4 374 61.2
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 6.2e-114 414.8 304 70.1
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.9e-113 411.4 363 62.8
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 9.9e-112 407.5 325 64.3
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 3.8e-111 405.6 346 62.4
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 3.8e-111 405.6 346 62.4
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 3.2e-110 402.5 349 61.3
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 9.3e-110 401.0 390 58.2
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 1.9e-107 393.3 320 63.8
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.9e-107 393.3 329 62.0
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 4.8e-106 388.7 381 58.0
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 4.0e-105 385.6 425 53.6
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 4.0e-105 385.6 327 62.4
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 3.2e-102 375.9 272 69.5
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 3.0e-100 369.4 304 65.8
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.1e-97 360.9 259 70.7
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 2.0e-96 356.7 258 73.3
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 5.9e-96 355.1 311 58.2
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 9.3e-94 347.8 344 57.8
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 5.9e-88 328.6 323 53.3
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 3.9e-84 315.8 291 56.0
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 2.0e-83 313.5 294 57.5
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 2.6e-83 313.2 208 73.6
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 9.1e-81 304.7 184 77.7
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 1.3e-74 284.3 221 65.2
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 1.5e-70 270.8 228 59.6
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 5.7e-67 258.8 183 72.1
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 8.0e-61 238.4 169 74.6
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.2e-53 214.5 179 64.2
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 3.4e-51 206.5 386 37.3
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.4e-44 184.5 139 72.7
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 5.4e-33 146.0 228 43.9
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.6e-32 144.4 79 83.5
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 7.3e-22 109.0 300 29.7
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 2.8e-21 107.1 300 28.3
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 4.7e-21 106.3 292 27.4
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.4e-19 100.1 136 44.9
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 2.9e-18 97.1 305 29.2
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 8.4e-18 95.5 300 26.7
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 8.4e-18 95.5 303 28.7
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 1.1e-17 95.1 305 28.5
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 1.1e-17 95.1 295 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.4e-17 94.7 293 27.6
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.4e-17 94.7 309 25.9
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.4e-17 94.7 293 26.6
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 3.2e-17 93.6 299 26.4
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 3.2e-17 93.6 293 28.7
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 7.1e-17 92.4 200 30.5
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 9.2e-17 92.0 299 26.4
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 9.2e-17 92.0 295 25.8
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 1.2e-16 91.7 295 25.8
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 3.5e-16 90.1 200 31.5
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 4.6e-16 89.7 297 25.3
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 6.0e-16 89.4 296 26.7
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 1.0e-15 88.6 294 26.2
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 1.0e-15 88.6 293 25.9
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 1.3e-15 88.2 295 26.1
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.7e-15 87.8 174 33.3
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 2.3e-15 87.4 184 31.0
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 2.3e-15 87.4 179 31.8
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 3.9e-15 86.7 302 25.5
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.9e-15 86.7 298 24.8
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.9e-15 86.7 298 25.2
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 3.9e-15 86.7 295 25.1
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 5.1e-15 86.3 295 26.1
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 6.6e-15 85.9 302 26.5
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 6.6e-15 85.9 198 31.8
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 8.7e-15 85.5 302 28.1
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 8.7e-15 85.5 298 25.2
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 8.7e-15 85.5 298 25.2
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 8.7e-15 85.5 192 31.2
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 8.7e-15 85.5 186 31.2
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 1.1e-14 85.1 200 29.0
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 1.1e-14 85.1 295 26.1
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 1.5e-14 84.7 294 25.5
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 1.9e-14 84.3 295 25.1
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 2.5e-14 84.0 303 25.1
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 3.3e-14 83.6 197 29.9
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 4.3e-14 83.2 197 29.4
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 4.3e-14 83.2 174 32.2
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 5.6e-14 82.8 197 28.4
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 7.3e-14 82.4 295 26.1
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 7.3e-14 82.4 295 26.1
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 9.6e-14 82.0 174 32.2
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 1.2e-13 81.6 184 31.0
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 1.6e-13 81.3 182 30.2
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 1.6e-13 81.3 182 30.2
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 1.6e-13 81.3 184 29.3
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 2.8e-13 80.5 300 25.3
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 2.8e-13 80.5 174 31.0
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 3.6e-13 80.1 197 29.4
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 1.1e-12 78.6 177 31.1
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 1.1e-12 78.6 189 29.6
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.8e-12 77.8 305 26.9
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 5.3e-12 76.3 299 27.8
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 1.5e-11 74.7 51 68.6
Aqoxy2G02504 Aquilegia oxysepala HOM05D006708 ORTHO05D008321 2.0e-11 74.3 349 24.6
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 9.9e-11 72.0 197 29.4
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 1.7e-10 71.2 277 25.3
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 6.4e-10 69.3 180 30.0
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.3e-07 61.6 146 28.1
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 1.7e-07 61.2 74 40.5
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 6.6e-07 59.3 146 28.1
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 1.1e-06 58.5 136 27.9
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 5.6e-06 56.2 137 27.7
Cfa014219 Carpinus fangiana HOM05D006708 ORTHO05D008321 7.3e-06 55.8 193 24.9


User provided reference genes

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