Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 0.0e+00 1226.5 623 100.0
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 2.1e-240 835.9 623 70.6
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 3.9e-239 831.6 619 70.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 2.0e-235 819.3 621 69.4
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.1e-228 797.0 630 67.5
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 2.4e-228 795.8 629 66.8
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 5.8e-227 791.2 629 65.8
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.8e-226 788.5 617 68.1
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.9e-225 786.2 626 67.4
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.9e-225 786.2 618 68.1
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 3.2e-225 785.4 619 68.5
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 9.3e-225 783.9 636 65.4
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.6e-224 783.1 626 66.3
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 7.9e-224 780.8 634 66.4
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.3e-223 780.0 626 67.1
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.5e-222 776.5 633 64.3
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 5.8e-219 764.6 619 65.1
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 7.9e-216 754.2 622 64.0
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 3.3e-214 748.8 624 63.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 6.3e-213 744.6 619 63.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 8.2e-213 744.2 627 65.2
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.1e-212 743.8 622 65.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 9.0e-212 740.7 627 63.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.5e-211 740.0 613 64.4
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.2e-210 736.1 633 62.7
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.9e-209 733.0 629 64.5
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 7.2e-209 731.1 630 64.6
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.2e-208 730.3 650 63.4
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.6e-208 729.9 628 62.3
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 4.6e-208 728.4 647 61.8
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 7.9e-208 727.6 632 60.6
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 8.7e-207 724.2 622 64.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.5e-206 722.6 636 60.5
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.3e-206 721.8 632 60.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 9.7e-206 720.7 633 60.5
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.6e-205 719.9 624 61.9
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.8e-205 719.2 621 63.0
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.7e-205 718.8 617 62.6
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.7e-205 718.8 621 63.0
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.1e-204 717.2 639 60.1
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.1e-204 717.2 625 62.4
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 3.1e-204 715.7 621 62.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 5.3e-204 714.9 623 62.6
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.0e-203 713.0 629 61.8
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.6e-203 712.6 637 61.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.4e-203 712.2 624 61.7
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.4e-203 712.2 616 62.7
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.7e-203 711.1 598 63.0
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-202 710.3 621 62.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-201 706.8 621 62.0
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 3.2e-201 705.7 622 60.3
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.6e-200 702.2 618 61.3
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 4.6e-200 701.8 602 63.1
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 6.1e-200 701.4 633 59.7
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.4e-199 700.3 623 61.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 2.3e-199 699.5 629 60.6
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.1e-198 697.2 625 59.5
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.5e-198 696.8 594 62.0
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.5e-198 696.8 616 60.2
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.3e-198 695.7 630 61.1
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.3e-197 693.7 632 59.5
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.7e-197 692.2 627 60.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 4.1e-196 688.7 624 61.5
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 4.1e-196 688.7 620 61.6
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.1e-196 688.7 617 60.8
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-195 686.8 638 59.9
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.6e-195 686.0 632 59.5
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 5.9e-195 684.9 622 60.6
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.9e-195 684.9 641 59.6
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.0e-194 684.1 620 59.7
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.0e-194 684.1 597 60.6
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.3e-194 683.7 618 61.3
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.9e-193 679.9 637 60.0
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 4.2e-193 678.7 627 59.0
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.6e-192 676.8 631 59.7
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.6e-192 676.8 594 60.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.6e-192 675.6 629 59.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 4.7e-192 675.2 626 60.7
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 6.1e-192 674.9 637 59.0
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 7.9e-192 674.5 618 58.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-191 673.7 615 62.0
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.8e-191 673.3 592 60.5
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.0e-191 672.5 622 60.5
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.0e-191 672.5 622 60.5
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 3.9e-191 672.2 616 59.4
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.8e-189 666.0 594 59.9
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 6.3e-189 664.8 637 57.1
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.1e-188 662.5 635 56.7
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 3.5e-187 659.1 634 60.1
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.9e-187 658.3 615 60.3
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-185 654.1 614 58.5
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.2e-185 652.1 620 58.4
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 9.4e-185 651.0 620 58.4
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 9.4e-185 651.0 620 58.4
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 8.0e-184 647.9 620 58.2
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.5e-182 643.7 619 58.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 1.7e-181 640.2 626 56.7
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.8e-181 639.4 516 66.3
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.8e-180 636.7 620 57.4
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 7.0e-180 634.8 620 57.3
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-179 633.3 552 62.1
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 4.7e-176 622.1 632 56.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 8.5e-170 601.3 544 61.4
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 7.2e-169 598.2 618 55.0
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-167 594.3 622 55.9
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.0e-167 594.3 551 59.2
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.7e-162 577.0 630 51.4
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.0e-150 537.0 585 52.5
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.2e-147 527.7 624 51.6
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 3.9e-146 522.7 636 49.1
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.8e-144 516.5 630 48.3
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 6.2e-144 515.4 643 48.1
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.0e-143 512.7 525 53.9
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.2e-143 512.3 639 50.7
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 4.9e-141 505.8 633 46.1
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.9e-140 503.8 608 48.4
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 4.0e-135 486.1 475 57.9
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.6e-123 447.6 515 50.1
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.6e-120 436.4 398 61.1
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 5.3e-119 432.6 525 49.7
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-108 398.3 428 54.4
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.6e-104 384.4 655 40.2
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.8e-104 383.6 335 61.2
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.1e-103 380.2 546 44.9
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 4.0e-103 379.8 441 50.1
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 6.5e-101 372.5 666 39.5
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.1e-92 345.1 377 54.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-92 344.7 381 54.3
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.7e-89 332.8 441 45.8
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.3e-88 331.6 276 63.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 6.1e-83 312.8 614 36.5
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 9.7e-81 305.4 244 62.3
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 3.2e-76 290.4 241 63.9
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 7.9e-75 285.8 565 37.2
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-71 274.2 446 42.2
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-70 271.2 396 44.4
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 9.4e-68 262.3 446 41.7
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 2.7e-59 234.2 146 73.3
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 4.7e-59 233.4 198 59.1
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.0e-58 230.7 764 28.9
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 7.8e-46 189.5 608 28.1
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.2e-41 175.6 347 38.6
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 2.2e-40 171.4 154 59.1
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.4e-39 168.7 594 28.6
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.4e-39 167.9 583 28.1
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-37 161.4 258 46.5
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.1e-34 152.5 183 46.4
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.3e-21 108.2 82 69.5
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 3.9e-21 107.5 60 80.0
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 6.8e-18 96.7 192 37.0
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 2.9e-16 91.3 87 59.8
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 8.7e-13 79.7 86 59.3
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.1e-10 72.8 81 56.8
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 4.2e-07 60.8 38 73.7
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 1.6e-06 58.9 77 45.5
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 2.1e-06 58.5 45 66.7


User provided reference genes

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