Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.4e-83 312.0 202 100.0
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.1e-77 292.7 202 94.1
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.5e-75 286.6 201 86.6
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.0e-75 286.2 201 85.6
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 9.8e-75 283.9 200 86.0
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 9.8e-75 283.9 201 84.6
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 6.3e-74 281.2 201 90.0
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 6.3e-74 281.2 201 90.0
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 8.3e-74 280.8 201 87.6
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.8e-73 279.6 202 87.1
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.4e-73 279.3 201 84.6
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.4e-73 279.3 201 89.6
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.2e-73 278.9 201 86.6
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 9.2e-73 277.3 202 85.1
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.2e-72 276.9 201 88.6
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.2e-72 276.9 200 86.0
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 1.6e-72 276.6 201 88.1
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 1.6e-72 276.6 201 88.1
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.6e-72 276.6 202 86.1
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 2.7e-72 275.8 200 90.0
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 3.5e-72 275.4 201 83.1
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 3.5e-72 275.4 200 84.0
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 3.5e-72 275.4 201 83.1
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 4.5e-72 275.0 202 84.2
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 4.5e-72 275.0 200 88.5
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 5.9e-72 274.6 200 90.0
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 5.9e-72 274.6 197 82.7
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 7.8e-72 274.2 201 89.1
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 7.8e-72 274.2 203 80.3
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.0e-71 273.9 200 89.0
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.7e-71 273.1 201 82.1
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.7e-71 273.1 200 88.5
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.9e-71 271.9 202 83.7
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 5.0e-71 271.6 201 83.1
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 5.0e-71 271.6 201 83.1
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.6e-71 271.2 197 85.8
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 8.6e-71 270.8 202 87.6
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.1e-70 270.4 201 82.6
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 1.1e-70 270.4 202 76.2
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 83.1
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.5e-70 270.0 201 87.1
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.9e-70 269.6 200 88.5
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.9e-70 269.6 201 83.6
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.3e-70 268.9 201 87.6
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 3.3e-70 268.9 200 87.5
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 3.3e-70 268.9 201 82.6
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 4.3e-70 268.5 203 82.8
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 4.3e-70 268.5 196 90.8
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 7.3e-70 267.7 201 81.6
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 7.3e-70 267.7 201 88.1
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 1.2e-69 266.9 200 83.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.2e-69 266.9 201 83.6
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.2e-69 266.9 200 87.0
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.6e-69 266.5 196 92.3
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 2.8e-69 265.8 201 83.1
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 2.8e-69 265.8 202 86.6
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 4.7e-69 265.0 202 82.2
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 4.7e-69 265.0 201 81.1
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 6.1e-69 264.6 201 86.6
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 6.1e-69 264.6 200 81.5
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.4e-68 263.5 200 85.5
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.4e-68 263.5 202 79.2
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 3.1e-68 262.3 200 85.5
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 4.0e-68 261.9 200 85.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.2e-68 261.5 201 82.6
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 6.8e-68 261.2 201 83.1
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 6.8e-68 261.2 201 83.1
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 8.9e-68 260.8 201 82.6
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.2e-67 260.4 200 83.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.0e-67 259.6 200 80.5
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 2.0e-67 259.6 200 81.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.6e-67 259.2 200 84.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 5.8e-67 258.1 198 81.3
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 7.5e-67 257.7 201 82.1
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 7.5e-67 257.7 201 76.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 7.5e-67 257.7 200 79.0
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.3e-66 256.9 201 80.1
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.3e-66 256.9 201 80.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.7e-66 256.5 195 84.1
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 2.2e-66 256.1 200 79.0
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 2.9e-66 255.8 200 77.5
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.9e-66 255.8 201 79.6
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 3.7e-66 255.4 201 74.6
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 4.9e-66 255.0 200 82.5
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 8.3e-66 254.2 199 77.4
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 8.3e-66 254.2 201 80.6
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.9e-65 253.1 197 81.7
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 5.4e-65 251.5 151 90.1
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 9.2e-65 250.8 203 78.8
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.0e-64 249.6 207 77.3
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.7e-64 249.2 207 77.3
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 2.7e-64 249.2 195 83.6
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.0e-64 248.1 201 79.6
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.0e-64 248.1 207 76.8
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.0e-64 248.1 204 77.9
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.3e-63 246.9 242 67.8
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 5.6e-62 241.5 211 62.6
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 7.3e-62 241.1 162 92.0
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 8.0e-61 237.7 197 75.1
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 8.0e-61 237.7 202 75.7
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.8e-60 234.6 199 82.9
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 8.9e-60 234.2 201 75.6
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.2e-59 233.8 204 70.6
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 2.0e-59 233.0 196 81.6
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.2e-58 229.6 145 81.4
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.7e-58 228.8 162 87.0
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.2e-57 225.7 297 57.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 5.4e-57 224.9 272 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.6e-51 204.5 148 67.6
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 7.6e-51 204.5 204 61.3
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.7e-50 202.2 201 68.7
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 8.3e-50 201.1 107 91.6
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.4e-49 199.5 201 57.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.1e-49 198.7 145 66.9
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.5e-48 195.7 193 69.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 4.6e-48 195.3 200 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.8e-48 194.5 141 69.5
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.4e-44 183.0 225 68.4
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.1e-44 182.6 157 75.2
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.2e-43 180.6 146 69.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.3e-37 160.6 124 87.1
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.3e-37 160.6 223 50.7
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.8e-37 158.7 123 69.9
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.8e-36 156.8 140 62.1
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.1e-36 156.0 210 60.5
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.3e-34 150.6 282 53.9
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 8.4e-34 147.9 204 50.5
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 4.2e-33 145.6 228 53.1
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.1e-23 112.1 153 45.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 3.3e-22 109.4 217 42.9
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 7.6e-19 98.2 96 75.0
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 6.5e-18 95.1 91 76.9
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 7.4e-14 81.6 202 36.6
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 2.4e-12 76.6 46 82.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.3e-07 60.8 159 25.2


User provided reference genes

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