Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G95 Trifolium pratense HOM05D003148 ORTHO05D030578 1.7e-111 406.0 204 100.0
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 3.0e-87 325.5 188 86.7
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 3.0e-87 325.5 188 87.2
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 8.6e-87 323.9 188 86.2
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 1.2e-85 320.1 193 84.5
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 3.7e-82 308.5 193 78.8
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 2.3e-79 299.3 193 77.7
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 1.2e-75 287.0 194 72.7
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 1.2e-75 287.0 192 75.5
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 4.9e-74 281.6 193 73.1
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 9.3e-73 277.3 196 70.9
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 1.2e-72 276.9 195 68.2
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 1.2e-72 276.9 194 70.1
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 1.6e-72 276.6 196 70.4
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 1.6e-72 276.6 194 68.6
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 3.5e-72 275.4 194 68.0
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 4.6e-72 275.0 196 70.4
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 7.8e-72 274.2 196 69.4
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 1.5e-70 270.0 194 68.6
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 7.3e-70 267.7 194 66.5
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.1e-69 266.2 191 67.5
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 1.1e-68 263.8 198 66.7
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 5.3e-68 261.5 194 66.0
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 2.6e-67 259.2 194 66.5
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.1e-65 253.8 204 65.7
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 5.4e-65 251.5 188 65.4
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 9.3e-65 250.8 188 67.0
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 1.6e-64 250.0 188 67.0
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 1.6e-64 250.0 188 67.0
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 2.1e-64 249.6 191 65.4
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 3.5e-64 248.8 191 67.0
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 3.0e-63 245.7 191 66.5
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 3.0e-63 245.7 192 65.6
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.1e-62 243.8 190 66.3
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 5.6e-62 241.5 188 64.9
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 6.2e-61 238.0 191 63.4
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 8.1e-61 237.7 191 62.8
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 2.4e-60 236.1 199 59.8
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 3.1e-60 235.7 192 63.0
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 9.0e-60 234.2 200 63.0
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 9.0e-60 234.2 200 62.5
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 2.0e-59 233.0 197 62.9
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 3.4e-59 232.3 199 58.8
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.4e-59 232.3 199 58.8
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.4e-59 232.3 199 59.3
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 5.8e-59 231.5 200 61.0
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 5.8e-59 231.5 200 62.0
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 7.6e-59 231.1 201 60.7
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 9.9e-59 230.7 194 60.3
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.3e-58 230.3 200 60.0
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.7e-58 229.9 206 61.7
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 1.7e-58 229.9 199 60.3
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.7e-58 229.9 204 59.3
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 2.2e-58 229.6 201 61.2
Duzib170G0998 Durio zibethinus HOM05D003148 ORTHO05D003894 2.2e-58 229.6 188 61.7
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 2.2e-58 229.6 199 61.8
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.9e-58 229.2 188 62.8
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 3.8e-58 228.8 200 60.0
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 3.8e-58 228.8 200 60.0
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 3.8e-58 228.8 195 62.6
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 4.9e-58 228.4 188 62.8
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 6.4e-58 228.0 200 59.5
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 6.4e-58 228.0 200 59.5
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 6.4e-58 228.0 201 60.2
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 8.4e-58 227.6 208 57.7
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 8.4e-58 227.6 199 60.8
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 1.9e-57 226.5 201 60.2
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.9e-57 226.5 199 60.3
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 1.9e-57 226.5 200 62.0
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.9e-57 226.5 194 60.3
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 3.2e-57 225.7 196 60.7
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 3.2e-57 225.7 202 58.4
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 5.5e-57 224.9 194 58.8
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 9.3e-57 224.2 206 62.6
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.2e-56 223.8 199 58.3
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 1.6e-56 223.4 205 57.1
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 2.1e-56 223.0 223 57.4
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 2.1e-56 223.0 195 60.0
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 2.1e-56 223.0 199 58.3
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 3.5e-56 222.2 208 58.7
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 4.6e-56 221.9 202 61.9
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 4.6e-56 221.9 202 61.9
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 4.6e-56 221.9 206 59.7
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 7.9e-56 221.1 208 59.1
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 7.9e-56 221.1 208 59.1
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 7.9e-56 221.1 190 60.5
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 7.9e-56 221.1 187 60.4
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.0e-55 220.7 206 61.7
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 1.0e-55 220.7 206 61.7
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 1.0e-55 220.7 211 58.3
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 2.3e-55 219.5 188 60.1
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 3.9e-55 218.8 208 58.7
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 3.9e-55 218.8 201 59.7
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 3.9e-55 218.8 194 59.8
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 3.9e-55 218.8 198 57.1
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.9e-55 218.8 199 56.8
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 3.9e-55 218.8 199 58.3
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 8.7e-55 217.6 201 60.7
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.1e-54 217.2 202 58.9
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 3.3e-54 215.7 202 56.4
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 4.3e-54 215.3 188 61.2
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 4.3e-54 215.3 202 55.4
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 9.6e-54 214.2 195 59.0
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 1.3e-53 213.8 199 58.8
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 1.6e-53 213.4 210 56.2
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 2.1e-53 213.0 206 60.7
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 2.4e-52 209.5 199 55.3
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 4.0e-52 208.8 196 55.1
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 5.3e-52 208.4 203 55.7
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 5.3e-52 208.4 206 54.4
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 1.2e-51 207.2 203 54.2
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 1.5e-51 206.8 196 58.7
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 2.6e-51 206.1 198 56.6
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 5.8e-51 204.9 228 51.8
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 1.0e-50 204.1 188 57.4
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 1.3e-50 203.8 203 57.6
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 2.2e-50 203.0 189 58.2
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 2.2e-50 203.0 204 57.8
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 3.8e-50 202.2 188 58.5
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 3.8e-50 202.2 199 54.8
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 8.4e-50 201.1 203 57.6
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.9e-49 199.9 199 57.3
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 1.9e-49 199.9 196 57.1
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 4.2e-49 198.7 190 56.8
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 9.3e-49 197.6 154 64.9
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 2.7e-48 196.1 191 56.0
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 3.5e-48 195.7 223 54.3
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.0e-47 194.1 206 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 3.0e-47 192.6 193 54.9
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 6.7e-47 191.4 195 54.9
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 8.7e-47 191.0 203 52.7
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 4.3e-46 188.7 204 52.0
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 7.4e-46 188.0 203 50.2
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 9.6e-46 187.6 188 54.8
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.1e-45 186.4 205 50.7
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 3.1e-44 182.6 191 54.5
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 4.1e-44 182.2 204 51.0
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 6.9e-44 181.4 197 51.8
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 1.3e-42 177.2 188 51.6
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 2.2e-42 176.4 242 46.3
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 3.2e-41 172.6 161 55.9
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 7.2e-41 171.4 164 56.1
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 1.6e-40 170.2 162 59.3
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 2.7e-40 169.5 291 40.5
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 1.6e-37 160.2 206 46.6
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 4.8e-37 158.7 200 45.5
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 2.0e-35 153.3 161 55.9
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 3.4e-35 152.5 190 46.8
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 7.7e-35 151.4 191 47.1
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.3e-34 150.6 167 50.3
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 1.3e-34 150.6 194 46.9
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 1.4e-31 140.6 279 34.4
TAR626G0592 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.2e-29 133.3 98 69.4
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 2.8e-29 132.9 112 62.5
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 7.7e-27 124.8 152 44.7
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 2.9e-26 122.9 154 46.8
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 1.9e-25 120.2 193 42.0
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.1e-24 116.7 88 61.4
CSS0009232 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.8e-23 113.6 152 42.8
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 2.0e-22 110.2 171 42.1
TPR.G20349 Trifolium pratense HOM05D003148 ORTHO05D030578 6.3e-21 105.1 52 98.1
SEGI_08935 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.0e-15 86.3 125 40.8
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 6.3e-13 78.6 114 41.2
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.1e-12 77.8 130 40.0
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.4e-12 77.4 134 38.8
Lju760A7G20 Lonicera japonica HOM05D003148 ORTHO05D003894 2.4e-12 76.6 119 39.5
TPR.G14286 Trifolium pratense HOM05D003148 ORTHO05D030578 1.0e-10 71.2 34 94.1
MELO3C000081.2 Cucumis melo HOM05D003148 ORTHO05D003894 1.4e-07 60.8 36 77.8
CSS0045288 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 4.0e-07 59.3 47 63.8
SHI31846 Sapria himalayana HOM05D003148 ORTHO05D030578 2.0e-06 57.0 32 78.1
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 2.6e-06 56.6 167 28.7


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