Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G814 Trifolium pratense HOM05D004988 ORTHO05D005845 1.2e-55 219.5 106 100.0
TPR.G1199 Trifolium pratense HOM05D004988 ORTHO05D005845 6.6e-38 160.6 75 98.7
Medtr5g093110 Medicago truncatula HOM05D004988 ORTHO05D005845 8.6e-38 160.2 75 97.3
Psat2g012000 Pisum sativum HOM05D004988 ORTHO05D005845 3.6e-36 154.8 75 96.0
Ca_06330_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 8.9e-35 150.2 72 95.8
Ca_30701_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 8.9e-35 150.2 72 95.8
Phvul.008G268900 Phaseolus vulgaris HOM05D004988 ORTHO05D005845 2.0e-34 149.1 75 90.7
Glyma.14G022400 Glycine max HOM05D004988 ORTHO05D005845 2.6e-34 148.7 75 90.7
VMungo0647G1120 Vigna mungo HOM05D004988 ORTHO05D005845 3.4e-34 148.3 75 89.3
Glyma.02G292202 Glycine max HOM05D004988 ORTHO05D005845 5.7e-34 147.5 75 89.3
LjContig00272g0019234 Lotus japonicus HOM05D004988 ORTHO05D005845 3.7e-33 144.8 75 89.3
Lalb_Chr04g0248341 Lupinus albus HOM05D004988 ORTHO05D005845 1.1e-32 143.3 75 88.0
arahy.Tifrunner.gnm1.ann1.E8M5A0 Arachis hypogaea HOM05D004988 ORTHO05D005845 9.2e-32 140.2 75 85.3
arahy.Tifrunner.gnm1.ann1.ZUJ4QN Arachis hypogaea HOM05D004988 ORTHO05D005845 2.0e-31 139.0 75 84.0
QL08p009463 Quercus lobata HOM05D004988 ORTHO05D005845 6.2e-28 127.5 75 73.3
Atru.chr1.2791 Acer truncatum HOM05D004988 ORTHO05D005845 3.1e-27 125.2 75 72.0
Thhalv10022259m.g Eutrema salsugineum HOM05D004988 ORTHO05D005845 2.0e-26 122.5 88 63.6
CARHR096230 Cardamine hirsuta HOM05D004988 ORTHO05D005845 2.6e-26 122.1 88 63.6
CiPaw.11G191700 Carya illinoinensis HOM05D004988 ORTHO05D005845 2.6e-26 122.1 75 70.7
Manes.03G131500 Manihot esculenta HOM05D004988 ORTHO05D005845 2.6e-26 122.1 75 70.7
PSO541G0855 Papaver somniferum HOM05D004988 ORTHO05D005845 2.6e-26 122.1 88 61.4
PGR083G2184 Punica granatum HOM05D004988 ORTHO05D005845 2.6e-26 122.1 75 74.7
Aa31LG8G7300 Aethionema arabicum HOM05D004988 ORTHO05D005845 3.4e-26 121.7 88 63.6
Haze_09701 Corylus avellana HOM05D004988 ORTHO05D005845 3.4e-26 121.7 75 70.7
AL3G34200 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 4.4e-26 121.3 77 68.8
Ciclev10010304m.g Citrus clementina HOM05D004988 ORTHO05D005845 4.4e-26 121.3 75 70.7
Actinidia35358 Actinidia chinensis HOM05D004988 ORTHO05D005845 5.8e-26 120.9 75 69.3
Cfa020320 Carpinus fangiana HOM05D004988 ORTHO05D005845 5.8e-26 120.9 75 69.3
CSS0026270 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 9.8e-26 120.2 75 68.0
CSS0035479 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 9.8e-26 120.2 75 68.0
GSVIVG01037674001 Vitis vinifera HOM05D004988 ORTHO05D005845 9.8e-26 120.2 75 68.0
AT3G20475 Arabidopsis thaliana HOM05D004988 ORTHO05D005845 1.3e-25 119.8 88 62.5
MBI18_g26501_MAGBIO Magnolia biondii HOM05D004988 ORTHO05D005845 1.3e-25 119.8 77 67.5
Carub.0003s2042 Capsella rubella HOM05D004988 ORTHO05D005845 1.7e-25 119.4 75 70.7
ATR0794G119 Amborella trichopoda HOM05D004988 ORTHO05D005845 2.9e-25 118.6 88 60.2
BcaNung07078 Brassica carinata HOM05D000284 ORTHO05D001229 2.9e-25 118.6 77 67.5
A05p28340 Brassica napus HOM05D000284 ORTHO05D005845 2.9e-25 118.6 88 60.2
BraA05t21720Z Brassica rapa HOM05D004988 ORTHO05D005845 2.9e-25 118.6 88 60.2
Sp3g18490 Schrenkiella parvula HOM05D004988 ORTHO05D005845 2.9e-25 118.6 77 67.5
TWI38G0959 Tripterygium wilfordii HOM05D004988 ORTHO05D005845 2.9e-25 118.6 75 66.7
Cc05_g13960 Coffea canephora HOM05D004988 ORTHO05D005845 3.7e-25 118.2 79 63.3
BcaNung06350 Brassica carinata HOM05D004988 ORTHO05D005845 4.9e-25 117.9 88 60.2
C05p43830 Brassica napus HOM05D000284 ORTHO05D005845 4.9e-25 117.9 88 60.2
Duzib213G0327 Durio zibethinus HOM05D004988 ORTHO05D005845 4.9e-25 117.9 75 70.7
Eucgr.F00744 Eucalyptus grandis HOM05D004988 ORTHO05D005845 4.9e-25 117.9 73 75.3
BolC5t33100H Brassica oleracea HOM05D004988 ORTHO05D005845 6.4e-25 117.5 88 59.1
Hma1.2p1_0036F.1_g023490 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 6.4e-25 117.5 75 66.7
vmacro09701 Vaccinium macrocarpon HOM05D004988 ORTHO05D005845 6.4e-25 117.5 75 66.7
Sabra11G0073600 Salix brachista HOM05D004988 ORTHO05D005845 1.1e-24 116.7 75 66.7
Sabra11G0079200 Salix brachista HOM05D004988 ORTHO05D005845 1.1e-24 116.7 75 66.7
MD11G1214700 Malus domestica HOM05D004988 ORTHO05D005845 1.4e-24 116.3 75 70.7
Thecc.07G033400 Theobroma cacao HOM05D004988 ORTHO05D005845 1.9e-24 115.9 75 69.3
AUR62015808 Chenopodium quinoa HOM05D004988 ORTHO05D005845 4.1e-24 114.8 75 69.3
AUR62020409 Chenopodium quinoa HOM05D004988 ORTHO05D005845 4.1e-24 114.8 75 69.3
PGR083G0916 Punica granatum HOM05D004988 ORTHO05D005845 4.1e-24 114.8 75 70.7
CANSAT11G0463 Cannabis sativa HOM05D004988 ORTHO05D005845 5.4e-24 114.4 75 68.0
Potri.011G089500 Populus trichocarpa HOM05D004988 ORTHO05D005845 7.0e-24 114.0 75 64.0
Gohir.A04G013900 Gossypium hirsutum HOM05D004988 ORTHO05D005845 9.2e-24 113.6 75 68.0
Gohir.D05G372400 Gossypium hirsutum HOM05D004988 ORTHO05D005845 9.2e-24 113.6 75 68.0
Gorai.009G440600 Gossypium raimondii HOM05D004988 ORTHO05D005845 9.2e-24 113.6 75 68.0
Aqoxy1G03129 Aquilegia oxysepala HOM05D004988 ORTHO05D005845 1.2e-23 113.2 75 65.3
Nitab4.5_0007776g0010 Nicotiana tabacum HOM05D004988 ORTHO05D005845 1.2e-23 113.2 76 61.8
HanXRQChr03g0079751 Helianthus annuus HOM05D004988 ORTHO05D005845 1.6e-23 112.8 81 63.0
HanXRQChr03g0079771 Helianthus annuus HOM05D004988 ORTHO05D005845 1.6e-23 112.8 81 63.0
HanXRQChr03g0079801 Helianthus annuus HOM05D004988 ORTHO05D005845 1.6e-23 112.8 81 63.0
HanXRQChr05g0152621 Helianthus annuus HOM05D004988 ORTHO05D005845 1.6e-23 112.8 81 63.0
THA.LOC104817863 Tarenaya hassleriana HOM05D004988 ORTHO05D005845 1.6e-23 112.8 80 65.0
HPP92_001598 Vanilla planifolia HOM05D004988 ORTHO05D005845 1.6e-23 112.8 75 66.7
Prupe.4G216500 Prunus persica HOM05D004988 ORTHO05D005845 2.0e-23 112.5 75 66.7
Solyc10g018530.2 Solanum lycopersicum HOM05D004988 ORTHO05D005845 2.0e-23 112.5 76 61.8
Sopen10g008290 Solanum pennellii HOM05D004988 ORTHO05D005845 2.0e-23 112.5 76 61.8
FAN25G1441 Fragaria x ananassa HOM05D004988 ORTHO05D005845 2.7e-23 112.1 75 68.0
FAN25G2375 Fragaria x ananassa HOM05D004988 ORTHO05D005845 2.7e-23 112.1 75 68.0
RhsimUnG0249000 Rhododendron simsii HOM05D004988 ORTHO05D005845 2.7e-23 112.1 75 64.0
RcHm_v2.0_Chr5g0040391 Rosa chinensis HOM05D004988 ORTHO05D005845 2.7e-23 112.1 75 66.7
Sc16g0005920 Simmondsia chinensis HOM05D004988 ORTHO05D005845 2.7e-23 112.1 75 66.7
FAN21G3129 Fragaria x ananassa HOM05D004988 ORTHO05D005845 3.5e-23 111.7 75 66.7
ECA240G2090 Erigeron canadensis HOM05D004988 ORTHO05D005845 4.6e-23 111.3 88 58.0
MELO3C032293.2 Cucumis melo HOM05D004988 ORTHO05D005845 6.0e-23 110.9 83 59.0
DCAR_009454 Daucus carota HOM05D004988 ORTHO05D005845 6.0e-23 110.9 76 63.2
FvH4_3g23000 Fragaria vesca HOM05D004988 ORTHO05D005845 7.8e-23 110.5 75 66.7
FAN11G0321 Fragaria x ananassa HOM05D004988 ORTHO05D005845 7.8e-23 110.5 75 66.7
CAN.G1568.1 Capsicum annuum HOM05D004988 ORTHO05D005845 1.7e-22 109.4 76 60.5
Sed0003845 Sechium edule HOM05D004988 ORTHO05D005845 1.7e-22 109.4 77 61.0
Migut.M01745 Erythranthe guttata HOM05D004988 ORTHO05D005845 6.6e-22 107.5 75 62.7
Lj1C874G10 Lonicera japonica HOM05D004988 ORTHO05D005845 8.6e-22 107.1 75 61.3
Oeu062583.1 Olea europaea HOM05D004988 ORTHO05D005845 8.6e-22 107.1 74 63.5
Os05g0498300 Oryza sativa ssp. japonica HOM05D004988 ORTHO05D005845 1.9e-21 105.9 77 63.6
CsaV3_3G004590 Cucumis sativus L. HOM05D004988 ORTHO05D005845 3.3e-21 105.1 81 55.6
SGA_v2.0_scaffold36G14386 Striga asiatica HOM05D004988 ORTHO05D005845 7.3e-21 104.0 75 58.7
MSTRG.6931 Avicennia marina HOM05D004988 ORTHO05D005845 1.6e-20 102.8 77 57.1
Lsat_1_v5_gn_9_90520 Lactuca sativa HOM05D004988 ORTHO05D005845 3.6e-20 101.7 92 52.2
Zm00001eb352660 Zea mays HOM05D004988 ORTHO05D005845 8.1e-20 100.5 77 59.7
Zm00001eb352670 Zea mays HOM05D004988 ORTHO05D005845 8.1e-20 100.5 77 59.7
Pp3c2_9530 Physcomitrium patens HOM05D004988 ORTHO05D005845 2.3e-19 99.0 82 54.9
SMO340G0188 Selaginella moellendorffii HOM05D004988 ORTHO05D005845 2.3e-19 99.0 74 55.4
CBR_g24261 Chara braunii HOM05D004988 ORTHO05D005845 1.5e-18 96.3 72 59.7
TAR626G0282 Trochodendron aralioides HOM05D004988 ORTHO05D005845 2.0e-18 95.9 72 63.9
Peaxi162Scf00350g00216 Petunia axillaris HOM05D004988 ORTHO05D005845 3.4e-18 95.1 109 44.0
AagrBONN_evm.TU.Sc2ySwM_344.3443 Anthoceros agrestis HOM05D004988 ORTHO05D005845 4.9e-17 91.3 75 54.7
Nitab4.5_0000882g0070 Nicotiana tabacum HOM05D004988 ORTHO05D005845 1.4e-16 89.7 79 54.4
Nn1g03486 Nelumbo nucifera HOM05D004988 ORTHO05D005845 4.1e-16 88.2 75 56.0
Cpa.g.sc12.283 Carica papaya HOM05D004988 ORTHO05D005845 1.6e-15 86.3 75 57.3
unitig_578.g15992 Utricularia gibba HOM05D004988 ORTHO05D005845 3.5e-15 85.1 109 45.0
Lsat_1_v5_gn_4_50920 Lactuca sativa HOM05D004988 ORTHO05D005845 6.0e-15 84.3 54 68.5
Hma1.2p1_0036F.1_g023500 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 5.1e-14 81.3 43 81.4
EL10Ac4g07775 Beta vulgaris HOM05D004988 ORTHO05D005845 9.5e-13 77.0 55 58.2
Mapoly0055s0066 Marchantia polymorpha HOM05D004988 ORTHO05D005845 1.6e-12 76.3 60 55.0
AUR62040154 Chenopodium quinoa HOM05D010230 ORTHO05D005845 1.2e-10 70.1 43 72.1
ClCG10G004940 Citrullus lanatus HOM05D004988 ORTHO05D005845 4.4e-10 68.2 81 44.4
MCO03G358 Micromonas commoda HOM05D004988 ORTHO05D005845 4.4e-10 68.2 86 43.0
Pp3c17_9120 Physcomitrium patens HOM05D004988 ORTHO05D005845 2.9e-09 65.5 45 62.2
FAN16G3602 Fragaria x ananassa HOM05D004988 ORTHO05D005845 5.4e-08 61.2 59 54.2
Hund02015 Selenicereus undatus HOM05D004988 ORTHO05D005845 2.1e-07 59.3 43 62.8
Cre17.g713650 Chlamydomonas reinhardtii HOM05D004988 ORTHO05D005845 3.9e-06 55.1 108 30.6


User provided reference genes

Program Settings