Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40489 Trifolium pratense HOM05D003093 ORTHO05D004301 2.8e-88 328.6 161 100.0
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 3.1e-79 298.5 167 88.0
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 4.4e-78 294.7 171 84.2
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 2.2e-69 265.8 171 76.0
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 2.1e-67 259.2 169 75.7
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 4.0e-63 245.0 171 71.9
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.2e-62 243.4 171 71.9
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 1.2e-62 243.4 169 71.6
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.5e-62 243.0 171 70.2
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 2.0e-62 242.7 171 70.8
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 4.4e-62 241.5 169 70.4
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 3.8e-61 238.4 171 70.2
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 4.9e-61 238.0 171 70.2
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.1e-60 236.9 171 69.0
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.4e-60 236.5 166 70.5
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 3.2e-60 235.3 171 69.6
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 4.2e-60 235.0 171 68.4
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 1.2e-59 233.4 171 69.0
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 1.6e-59 233.0 169 69.2
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 2.7e-59 232.3 171 67.8
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 2.7e-59 232.3 171 67.8
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 3.5e-59 231.9 164 68.9
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 4.6e-59 231.5 171 66.7
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 6.0e-59 231.1 166 67.5
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 1.7e-58 229.6 164 67.1
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 3.0e-58 228.8 166 66.9
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.1e-58 228.0 166 68.7
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 6.6e-58 227.6 166 66.3
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 6.6e-58 227.6 166 67.5
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 6.6e-58 227.6 164 67.1
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 6.6e-58 227.6 165 66.7
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.5e-57 226.5 165 65.5
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.5e-57 226.5 166 66.3
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 1.9e-57 226.1 165 66.1
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.9e-57 226.1 166 66.3
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 2.5e-57 225.7 166 65.7
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.3e-57 225.3 166 68.1
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 4.3e-57 224.9 163 66.9
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 4.3e-57 224.9 166 65.7
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 5.6e-57 224.6 165 66.1
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.6e-56 223.0 165 66.1
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 3.6e-56 221.9 164 65.2
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 3.6e-56 221.9 166 65.1
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 4.8e-56 221.5 166 64.5
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 4.8e-56 221.5 166 64.5
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 6.2e-56 221.1 168 67.9
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 8.1e-56 220.7 163 66.9
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 8.1e-56 220.7 164 65.9
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.4e-55 219.9 167 64.7
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.8e-55 219.5 167 64.1
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 2.4e-55 219.2 170 65.9
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 2.4e-55 219.2 166 66.3
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 3.1e-55 218.8 166 63.9
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 3.1e-55 218.8 163 66.9
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 4.0e-55 218.4 166 64.5
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 5.3e-55 218.0 168 64.3
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.9e-55 217.6 167 64.1
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 9.0e-55 217.2 166 64.5
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 1.5e-54 216.5 165 64.2
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 1.5e-54 216.5 164 65.9
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 1.5e-54 216.5 167 64.1
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 2.0e-54 216.1 170 65.3
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 2.0e-54 216.1 170 65.9
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 2.6e-54 215.7 165 63.0
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 3.4e-54 215.3 162 65.4
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 3.4e-54 215.3 166 63.3
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 3.4e-54 215.3 167 62.9
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 4.5e-54 214.9 165 62.4
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 4.5e-54 214.9 166 63.9
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 9.9e-54 213.8 166 62.0
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 9.9e-54 213.8 166 63.9
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 9.9e-54 213.8 170 65.3
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.3e-53 213.4 165 64.2
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 1.3e-53 213.4 169 59.8
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.7e-53 213.0 166 62.7
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 1.7e-53 213.0 166 62.7
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.7e-53 213.0 167 64.1
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.7e-53 213.0 166 63.9
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 2.2e-53 212.6 165 63.6
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 3.8e-53 211.8 166 62.7
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 4.9e-53 211.5 164 62.8
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 4.9e-53 211.5 163 62.0
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 6.4e-53 211.1 167 63.5
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 6.4e-53 211.1 163 64.4
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 6.4e-53 211.1 170 63.5
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 8.4e-53 210.7 166 62.7
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.1e-52 210.3 164 62.8
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 1.4e-52 209.9 165 62.4
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 1.9e-52 209.5 167 63.5
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.9e-52 209.5 164 62.2
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 3.2e-52 208.8 166 61.4
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 4.2e-52 208.4 166 61.4
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 4.2e-52 208.4 166 61.4
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 5.4e-52 208.0 170 58.2
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.4e-52 208.0 166 61.4
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 5.4e-52 208.0 165 61.2
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 7.1e-52 207.6 165 63.0
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 9.3e-52 207.2 165 62.4
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 9.3e-52 207.2 171 60.2
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 2.1e-51 206.1 165 62.4
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 3.5e-51 205.3 169 60.9
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 4.6e-51 204.9 165 60.6
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 6.0e-51 204.5 170 58.2
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 7.9e-51 204.1 166 60.8
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 7.9e-51 204.1 166 60.2
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 7.9e-51 204.1 164 61.6
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.0e-50 203.8 171 59.6
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 1.0e-50 203.8 164 61.0
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 1.3e-50 203.4 165 60.0
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 1.8e-50 203.0 166 60.8
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 2.3e-50 202.6 166 60.8
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.3e-50 202.6 166 60.8
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.7e-50 201.1 166 60.2
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.7e-50 201.1 166 60.2
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.7e-50 201.1 166 60.2
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 8.7e-50 200.7 169 60.4
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.5e-49 199.9 166 58.4
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.5e-49 199.9 166 61.4
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 1.9e-49 199.5 171 58.5
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 1.9e-49 199.5 171 58.5
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 1.9e-49 199.5 166 59.6
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 1.9e-49 199.5 173 59.0
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.9e-49 199.5 169 59.2
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 3.3e-49 198.7 172 57.0
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 3.3e-49 198.7 172 57.0
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 4.3e-49 198.4 172 57.0
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 4.3e-49 198.4 171 58.5
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 4.3e-49 198.4 172 57.0
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 4.3e-49 198.4 171 58.5
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 5.6e-49 198.0 167 58.1
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 5.6e-49 198.0 171 56.7
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 9.6e-49 197.2 171 57.9
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 1.3e-48 196.8 162 61.1
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 1.3e-48 196.8 165 60.6
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 1.1e-47 193.7 163 59.5
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 1.4e-47 193.4 169 55.6
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.8e-47 193.0 165 59.4
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 3.4e-46 188.7 165 57.6
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 3.4e-46 188.7 171 55.0
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 9.9e-46 187.2 164 57.3
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 3.2e-44 182.2 161 58.4
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 2.7e-43 179.1 163 54.0
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 3.5e-43 178.7 161 59.6
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.0e-42 177.2 165 54.5
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 8.7e-42 174.1 161 56.5
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 4.0e-39 165.2 128 66.4
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 2.5e-33 146.0 95 72.6
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 1.1e-31 140.6 156 49.4
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.1e-31 139.0 156 48.7
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 8.5e-29 131.0 121 55.4
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 1.6e-27 126.7 86 68.6
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 6.1e-27 124.8 210 35.2
CAN.G97.8 Capsicum annuum HOM05D003093 ORTHO05D018860 3.0e-26 122.5 96 62.5
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 2.5e-25 119.4 96 62.5
Prupe.6G042200 Prunus persica HOM05D003093 ORTHO05D004301 2.2e-24 116.3 97 55.7
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 1.5e-22 110.2 78 73.1
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 1.0e-21 107.5 174 36.8
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 1.3e-21 107.1 83 67.5
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 3.8e-21 105.5 167 37.1
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 1.4e-20 103.6 169 36.7
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 1.9e-20 103.2 146 39.0
CAN.G28.18 Capsicum annuum HOM05D003093 ORTHO05D004301 2.4e-15 86.3 111 47.7
unitig_88.g27762 Utricularia gibba HOM05D003093 ORTHO05D004301 5.3e-15 85.1 55 63.6
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 8.5e-13 77.8 49 71.4
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 1.9e-12 76.6 130 37.7
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 4.2e-12 75.5 186 27.4
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 2.0e-09 66.6 138 34.1
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 4.8e-08 62.0 51 56.9
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 1.1e-07 60.8 130 33.8
TPR.G27025 Trifolium pratense HOM05D003093 ORTHO05D410825 7.0e-07 58.2 41 68.3


User provided reference genes

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