Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G40387 Trifolium pratense HOM05D001534 ORTHO05D003503 1.1e-40 169.5 83 100.0
TPR.G18311 Trifolium pratense HOM05D026048 ORTHO05D026205 5.0e-17 90.9 61 77.0
TPR.G16185 Trifolium pratense HOM05D001534 ORTHO05D003503 3.0e-14 81.6 42 97.6
Medtr7g024860 Medicago truncatula HOM05D001534 ORTHO05D003503 6.8e-14 80.5 42 95.2
Medtr7g024867 Medicago truncatula HOM05D001534 ORTHO05D003503 6.8e-14 80.5 42 95.2
Ca_07287_v3 Cicer arietinum L. HOM05D001534 ORTHO05D003503 1.2e-13 79.7 42 92.9
Psat3g179000 Pisum sativum HOM05D001534 ORTHO05D003503 1.3e-12 76.3 42 90.5
GSVIVG01030396001 Vitis vinifera HOM05D001534 ORTHO05D003503 1.3e-12 76.3 50 76.0
Lj8C131G11 Lonicera japonica HOM05D001534 ORTHO05D003503 1.7e-12 75.9 42 85.7
Potri.014G161100 Populus trichocarpa HOM05D001534 ORTHO05D003503 2.2e-12 75.5 42 85.7
SHI09416 Sapria himalayana HOM05D001534 ORTHO05D003503 2.2e-12 75.5 64 60.9
arahy.Tifrunner.gnm1.ann1.9Y4IVD Arachis hypogaea HOM05D001534 ORTHO05D003503 2.8e-12 75.1 42 88.1
arahy.Tifrunner.gnm1.ann1.E4KFI0 Arachis hypogaea HOM05D001534 ORTHO05D003503 2.8e-12 75.1 42 88.1
Lj1g0005996 Lotus japonicus HOM05D001534 ORTHO05D003503 2.8e-12 75.1 42 88.1
RcHm_v2.0_Chr2g0157381 Rosa chinensis HOM05D001534 ORTHO05D003503 2.8e-12 75.1 42 83.3
Sabra14G0122800 Salix brachista HOM05D001534 ORTHO05D003503 2.8e-12 75.1 42 85.7
Eucgr.K00716 Eucalyptus grandis HOM05D001534 ORTHO05D003503 3.7e-12 74.7 42 83.3
Peaxi162Scf00235g00825 Petunia axillaris HOM05D001534 ORTHO05D003503 3.7e-12 74.7 43 83.7
CAN.G337.48 Capsicum annuum HOM05D001534 ORTHO05D003503 4.8e-12 74.3 42 85.7
COL.COLO4_31994 Corchorus olitorius HOM05D001534 ORTHO05D003503 4.8e-12 74.3 42 83.3
Glyma.18G290200 Glycine max HOM05D001534 ORTHO05D003503 4.8e-12 74.3 42 88.1
MBI16_g41928_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D003503 4.8e-12 74.3 42 85.7
Rhsim04G0046200 Rhododendron simsii HOM05D001534 ORTHO05D003503 4.8e-12 74.3 46 78.3
SEGI_33144 Sequoiadendron giganteum HOM05D001534 ORTHO05D003503 4.8e-12 74.3 42 83.3
VMungo1383G1595 Vigna mungo HOM05D001534 ORTHO05D003503 4.8e-12 74.3 72 61.1
Dinv08700 Davidia involucrata HOM05D001534 ORTHO05D003503 6.3e-12 73.9 42 83.3
Glyma.02G092400 Glycine max HOM05D001534 ORTHO05D003503 6.3e-12 73.9 42 85.7
Hma1.2p1_0133F.1_g060880 Hydrangea macrophylla HOM05D001534 ORTHO05D003503 6.3e-12 73.9 58 69.0
SEGI_08294 Sequoiadendron giganteum HOM05D001534 ORTHO05D003503 6.3e-12 73.9 42 81.0
GSVIVG01030398001 Vitis vinifera HOM05D001534 ORTHO05D003503 6.3e-12 73.9 42 83.3
Cfa014286 Carpinus fangiana HOM05D001534 ORTHO05D003503 8.3e-12 73.6 42 83.3
Cc05_g02930 Coffea canephora HOM05D001534 ORTHO05D003503 8.3e-12 73.6 42 83.3
PSO210G6494 Papaver somniferum HOM05D001534 ORTHO05D003503 8.3e-12 73.6 42 83.3
PSO302G0157 Papaver somniferum HOM05D001534 ORTHO05D003503 8.3e-12 73.6 42 83.3
Thecc.01G187000 Theobroma cacao HOM05D001534 ORTHO05D003503 8.3e-12 73.6 43 81.4
CDE04G2962 Ceratophyllum demersum HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 83.3
CDE06G1567 Ceratophyllum demersum HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 83.3
FvH4_6g41670 Fragaria vesca HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 81.0
FAN05G0005 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 81.0
Nitab4.5_0001160g0050 Nicotiana tabacum HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 83.3
Nitab4.5_0005874g0010 Nicotiana tabacum HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 83.3
TWI75G1639 Tripterygium wilfordii HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 83.3
TAR626G1331 Trochodendron aralioides HOM05D001534 ORTHO05D003503 1.1e-11 73.2 42 83.3
FAN25G2799 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.4e-11 72.8 42 81.0
MD09G1117900 Malus domestica HOM05D001534 ORTHO05D003503 1.4e-11 72.8 42 81.0
MD17G1109200 Malus domestica HOM05D001534 ORTHO05D003503 1.4e-11 72.8 42 81.0
Solyc07g065040.3 Solanum lycopersicum HOM05D001534 ORTHO05D003503 1.4e-11 72.8 42 83.3
Sopen07g033250 Solanum pennellii HOM05D001534 ORTHO05D003503 1.4e-11 72.8 42 83.3
PGSC0003DMG400022296 Solanum tuberosum HOM05D001534 ORTHO05D003503 1.4e-11 72.8 42 83.3
FvH4_3g23640 Fragaria vesca HOM05D001534 ORTHO05D003503 1.8e-11 72.4 42 78.6
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.8e-11 72.4 42 78.6
FAN16G3611 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.8e-11 72.4 42 78.6
FAN21G3843 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.8e-11 72.4 42 78.6
Prupe.3G206000 Prunus persica HOM05D001534 ORTHO05D003503 1.8e-11 72.4 42 81.0
RcHm_v2.0_Chr5g0041701 Rosa chinensis HOM05D001534 ORTHO05D003503 1.8e-11 72.4 42 78.6
GSVIVG01030390001 Vitis vinifera HOM05D001534 ORTHO05D003503 1.8e-11 72.4 42 83.3
CiPaw.03G275100 Carya illinoinensis HOM05D001534 ORTHO05D003503 2.4e-11 72.0 42 81.0
DCAR_019732 Daucus carota HOM05D001534 ORTHO05D003503 2.4e-11 72.0 42 81.0
FAN14G2718 Fragaria x ananassa HOM05D001534 ORTHO05D003503 2.4e-11 72.0 42 78.6
Lalb_Chr10g0091691 Lupinus albus HOM05D001534 ORTHO05D003503 2.4e-11 72.0 42 85.7
Atru.chr2.3540 Acer truncatum HOM05D001534 ORTHO05D003503 3.1e-11 71.6 41 82.9
Atru.chr2.3560 Acer truncatum HOM05D001534 ORTHO05D003503 3.1e-11 71.6 41 82.9
Ciclev10014827m.g Citrus clementina HOM05D001534 ORTHO05D003503 3.1e-11 71.6 42 85.7
CANSAT56G4167 Cannabis sativa HOM05D001534 ORTHO05D003503 4.1e-11 71.2 42 81.0
CsaV3_7G003000 Cucumis sativus L. HOM05D001534 ORTHO05D003503 4.1e-11 71.2 42 81.0
CSS0020811 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D003503 5.4e-11 70.9 42 81.0
Nn2g11769 Nelumbo nucifera HOM05D001534 ORTHO05D003503 5.4e-11 70.9 41 82.9
RcHm_v2.0_Chr5g0042151 Rosa chinensis HOM05D001534 ORTHO05D003503 5.4e-11 70.9 40 77.5
vmacro09377 Vaccinium macrocarpon HOM05D001534 ORTHO05D003503 5.4e-11 70.9 42 81.0
FAN09G2342 Fragaria x ananassa HOM05D001534 ORTHO05D003503 7.0e-11 70.5 42 76.2
Lj6g0018007 Lotus japonicus HOM05D001534 ORTHO05D003503 7.0e-11 70.5 42 78.6
QL08p029804 Quercus lobata HOM05D001534 ORTHO05D003503 7.0e-11 70.5 60 63.3
unitig_8.g3633 Utricularia gibba HOM05D001534 ORTHO05D003503 7.0e-11 70.5 42 81.0
Cfa020269 Carpinus fangiana HOM05D001534 ORTHO05D003503 9.1e-11 70.1 67 58.2
Migut.M01701 Erythranthe guttata HOM05D001534 ORTHO05D003503 9.1e-11 70.1 42 78.6
Oeu007991.1 Olea europaea HOM05D001534 ORTHO05D003503 9.1e-11 70.1 42 81.0
Phvul.008G012100 Phaseolus vulgaris HOM05D001534 ORTHO05D003503 9.1e-11 70.1 42 81.0
Prupe.4G224900 Prunus persica HOM05D001534 ORTHO05D003503 9.1e-11 70.1 42 76.2
MSTRG.6966 Avicennia marina HOM05D001534 ORTHO05D003503 1.2e-10 69.7 42 81.0
PGR142G0662 Punica granatum HOM05D001534 ORTHO05D003503 1.2e-10 69.7 42 78.6
Thecc.07G026100 Theobroma cacao HOM05D001534 ORTHO05D003503 1.2e-10 69.7 42 81.0
TWI39G0531 Tripterygium wilfordii HOM05D001534 ORTHO05D003503 1.2e-10 69.7 42 78.6
GSVIVG01037737001 Vitis vinifera HOM05D001534 ORTHO05D003503 1.2e-10 69.7 42 81.0
Gohir.D07G090900 Gossypium hirsutum HOM05D001534 ORTHO05D003503 1.6e-10 69.3 42 76.2
Gorai.001G097400 Gossypium raimondii HOM05D001534 ORTHO05D003503 1.6e-10 69.3 42 76.2
SalBow8G3768 Salvia bowleyana HOM05D001534 ORTHO05D003503 1.6e-10 69.3 42 78.6
TAR629G2464 Trochodendron aralioides HOM05D001534 ORTHO05D003503 1.6e-10 69.3 42 78.6
Atru.chr6.3305 Acer truncatum HOM05D001534 ORTHO05D003503 2.0e-10 68.9 42 81.0
Aqoxy1G04095 Aquilegia oxysepala HOM05D001534 ORTHO05D003503 2.0e-10 68.9 42 76.2
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 2.0e-10 68.9 42 78.6
PGR083G1700 Punica granatum HOM05D001534 ORTHO05D003503 2.0e-10 68.9 67 52.2
HPP92_020513 Vanilla planifolia HOM05D001534 ORTHO05D003503 2.0e-10 68.9 42 76.2
CANSAT11G2616 Cannabis sativa HOM05D001534 ORTHO05D003503 2.7e-10 68.6 65 55.4
Ciclev10007970m.g Citrus clementina HOM05D001534 ORTHO05D003503 2.7e-10 68.6 41 78.0
MELO3C018875.2 Cucumis melo HOM05D001534 ORTHO05D003503 2.7e-10 68.6 42 78.6
MD03G1192300 Malus domestica HOM05D001534 ORTHO05D003503 2.7e-10 68.6 42 73.8
Manes.03G135700 Manihot esculenta HOM05D001534 ORTHO05D003503 2.7e-10 68.6 42 78.6
Manes.13G064400 Manihot esculenta HOM05D001534 ORTHO05D003503 2.7e-10 68.6 42 76.2
MELO3C014358.2 Cucumis melo HOM05D001534 ORTHO05D003503 3.5e-10 68.2 42 78.6
CsaV3_6G037540 Cucumis sativus L. HOM05D001534 ORTHO05D003503 3.5e-10 68.2 42 78.6
Potri.001G359400 Populus trichocarpa HOM05D001534 ORTHO05D003503 3.5e-10 68.2 41 80.5
Sabra16G0237100 Salix brachista HOM05D001534 ORTHO05D003503 3.5e-10 68.2 41 80.5
Sed0024846 Sechium edule HOM05D001534 ORTHO05D003503 3.5e-10 68.2 42 78.6
THA.LOC104801015 Tarenaya hassleriana HOM05D001534 ORTHO05D003503 3.5e-10 68.2 42 73.8
Cc05_g14400 Coffea canephora HOM05D001534 ORTHO05D003503 4.5e-10 67.8 42 78.6
Duzib213G0269 Durio zibethinus HOM05D001534 ORTHO05D003503 4.5e-10 67.8 42 78.6
TPR.G32247 Trifolium pratense HOM05D001534 ORTHO05D003503 4.5e-10 67.8 42 78.6
CAN.G492.25 Capsicum annuum HOM05D001534 ORTHO05D003503 5.9e-10 67.4 42 78.6
CiPaw.11G195500 Carya illinoinensis HOM05D001534 ORTHO05D003503 5.9e-10 67.4 42 76.2
Ca_14770_v3 Cicer arietinum L. HOM05D001534 ORTHO05D003503 5.9e-10 67.4 42 76.2
Dinv40801 Davidia involucrata HOM05D001534 ORTHO05D003503 5.9e-10 67.4 42 73.8
Duzib133G0537 Durio zibethinus HOM05D001534 ORTHO05D003503 5.9e-10 67.4 42 76.2
Glyma.08G322700 Glycine max HOM05D001534 ORTHO05D003503 5.9e-10 67.4 42 76.2
Nitab4.5_0004445g0040 Nicotiana tabacum HOM05D001534 ORTHO05D003503 5.9e-10 67.4 42 78.6
RcHm_v2.0_Chr5g0042101 Rosa chinensis HOM05D001534 ORTHO05D003503 5.9e-10 67.4 43 72.1
EL10Ac9g22782 Beta vulgaris HOM05D001534 ORTHO05D003503 7.7e-10 67.0 42 78.6
Cpa.g.sc132.59 Carica papaya HOM05D001534 ORTHO05D003503 1.0e-09 66.6 42 73.8
Haze_09753 Corylus avellana HOM05D001534 ORTHO05D003503 1.0e-09 66.6 42 78.6
Gohir.A07G085500 Gossypium hirsutum HOM05D001534 ORTHO05D003503 1.3e-09 66.2 42 73.8
Hund01948 Selenicereus undatus HOM05D001534 ORTHO05D003503 1.3e-09 66.2 42 78.6
Medtr3g055240 Medicago truncatula HOM05D001534 ORTHO05D003503 1.7e-09 65.9 42 76.2
Sed0022177 Sechium edule HOM05D001534 ORTHO05D036974 1.7e-09 65.9 42 73.8
Cpa.g.sc12.241 Carica papaya HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 73.8
ClCG00G004150 Citrullus lanatus HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 76.2
ClCG02G002420 Citrullus lanatus HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 76.2
Os01g0510800 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 73.8
Phvul.006G049000 Phaseolus vulgaris HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 73.8
Solyc10g006100.3 Solanum lycopersicum HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 76.2
Sopen10g002050 Solanum pennellii HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 76.2
PGSC0003DMG400014413 Solanum tuberosum HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 76.2
VMungo0540G2440 Vigna mungo HOM05D001534 ORTHO05D003503 2.2e-09 65.5 42 73.8
AUR62015901 Chenopodium quinoa HOM05D001534 ORTHO05D003503 2.9e-09 65.1 42 76.2
Haze_12731 Corylus avellana HOM05D001534 ORTHO05D003503 2.9e-09 65.1 42 76.2
Ah.14g082990 Amaranthus hybridus HOM05D001534 ORTHO05D003503 3.8e-09 64.7 42 73.8
MD11G1208800 Malus domestica HOM05D001534 ORTHO05D003503 3.8e-09 64.7 42 71.4
Psat5g175760 Pisum sativum HOM05D001534 ORTHO05D003503 3.8e-09 64.7 42 73.8
Ah.04g166260 Amaranthus hybridus HOM05D001534 ORTHO05D003503 5.0e-09 64.3 42 73.8
EL10Ac4g07675 Beta vulgaris HOM05D001534 ORTHO05D003503 5.0e-09 64.3 42 76.2
Lj8A174G68 Lonicera japonica HOM05D001534 ORTHO05D003503 5.0e-09 64.3 41 73.2
Sc16g0005670 Simmondsia chinensis HOM05D001534 ORTHO05D003503 5.0e-09 64.3 42 73.8
SGA_v2.0_scaffold171G38904 Striga asiatica HOM05D001534 ORTHO05D003503 5.0e-09 64.3 42 76.2
AUR62015100 Chenopodium quinoa HOM05D001534 ORTHO05D003503 6.5e-09 63.9 42 76.2
AUR62017561 Chenopodium quinoa HOM05D001534 ORTHO05D003503 6.5e-09 63.9 42 76.2
AUR62020321 Chenopodium quinoa HOM05D001534 ORTHO05D003503 6.5e-09 63.9 42 73.8
Zm00001eb398430 Zea mays HOM05D001534 ORTHO05D003503 6.5e-09 63.9 42 73.8
Actinidia00114 Actinidia chinensis HOM05D001534 ORTHO05D003503 8.5e-09 63.5 41 73.2
Nitab4.5_0001393g0010 Nicotiana tabacum HOM05D001534 ORTHO05D003503 1.5e-08 62.8 42 73.8
CARHR004360 Cardamine hirsuta HOM05D001534 ORTHO05D003503 2.5e-08 62.0 66 50.0
Pp3c27_1990 Physcomitrium patens HOM05D001534 ORTHO05D003503 3.2e-08 61.6 41 70.7
HanXRQChr15g0492651 Helianthus annuus HOM05D001534 ORTHO05D003503 4.2e-08 61.2 41 68.3
arahy.Tifrunner.gnm1.ann1.C8Z9ST Arachis hypogaea HOM05D001534 ORTHO05D003503 5.5e-08 60.8 42 71.4
arahy.Tifrunner.gnm1.ann1.FLZ4J4 Arachis hypogaea HOM05D001534 ORTHO05D003503 5.5e-08 60.8 42 71.4
Lalb_Chr20g0115811 Lupinus albus HOM05D001534 ORTHO05D003503 5.5e-08 60.8 43 69.8
arahy.Tifrunner.gnm1.ann1.T9VJMQ Arachis hypogaea HOM05D001534 ORTHO05D003503 7.2e-08 60.5 42 69.0
Rhsim06G0224300 Rhododendron simsii HOM05D001534 ORTHO05D003503 9.4e-08 60.1 41 70.7
Aa31LG1G20030 Aethionema arabicum HOM05D001534 ORTHO05D003503 1.6e-07 59.3 42 66.7
Eucgr.F00646 Eucalyptus grandis HOM05D001534 ORTHO05D003503 1.6e-07 59.3 42 66.7
Hma1.2p1_0036F.1_g023030 Hydrangea macrophylla HOM05D001534 ORTHO05D003503 1.6e-07 59.3 42 69.0
Lalb_Chr20g0116131 Lupinus albus HOM05D001534 ORTHO05D003503 1.6e-07 59.3 42 69.0
vmacro22994 Vaccinium macrocarpon HOM05D001534 ORTHO05D003503 1.6e-07 59.3 41 70.7
Carub.0001s0419 Capsella rubella HOM05D001534 ORTHO05D003503 2.1e-07 58.9 42 69.0
ECA236G2991 Erigeron canadensis HOM05D001534 ORTHO05D003503 2.7e-07 58.5 67 50.7
Thhalv10007291m.g Eutrema salsugineum HOM05D001534 ORTHO05D003503 3.6e-07 58.2 42 66.7
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 6.1e-07 57.4 42 66.7
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 6.1e-07 57.4 42 66.7
AT1G04950 Arabidopsis thaliana HOM05D001534 ORTHO05D003503 8.0e-07 57.0 42 66.7
C05p03100 Brassica napus HOM05D001534 ORTHO05D003503 8.0e-07 57.0 42 66.7
BolC5t29092H Brassica oleracea HOM05D001534 ORTHO05D003503 8.0e-07 57.0 42 66.7
Sp1g03800 Schrenkiella parvula HOM05D001534 ORTHO05D003503 8.0e-07 57.0 42 66.7
AL1G14680 Arabidopsis lyrata HOM05D001534 ORTHO05D003503 1.0e-06 56.6 42 66.7
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 1.0e-06 56.6 42 66.7
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 1.0e-06 56.6 42 66.7
CARHR046040 Cardamine hirsuta HOM05D001534 ORTHO05D003503 1.0e-06 56.6 43 65.1
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 1.4e-06 56.2 42 64.3
A10p03380 Brassica napus HOM05D001534 ORTHO05D003503 1.4e-06 56.2 42 64.3
BraA10t42614Z Brassica rapa HOM05D001534 ORTHO05D003503 1.4e-06 56.2 42 64.3
Mapoly0040s0126 Marchantia polymorpha HOM05D001534 ORTHO05D003503 1.8e-06 55.8 41 63.4
Carub.0001s4481 Capsella rubella HOM05D001534 ORTHO05D003503 4.0e-06 54.7 43 65.1
ATR1101G058 Amborella trichopoda HOM05D001534 ORTHO05D003503 5.2e-06 54.3 42 66.7
AL1G64580 Arabidopsis lyrata HOM05D001534 ORTHO05D003503 8.8e-06 53.5 43 65.1
DCAR_016645 Daucus carota HOM05D001534 ORTHO05D003503 8.8e-06 53.5 42 61.9
SMO116G0133 Selaginella moellendorffii HOM05D001534 ORTHO05D003503 8.8e-06 53.5 41 68.3
THA.LOC104815714 Tarenaya hassleriana HOM05D001534 ORTHO05D003503 8.8e-06 53.5 43 60.5


User provided reference genes

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