Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 7.7e-52 206.8 102 100.0
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 7.5e-31 137.1 198 45.5
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 1.7e-30 136.0 197 45.2
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 1.5e-26 122.9 198 41.4
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.9e-26 122.5 195 41.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 3.3e-26 121.7 195 41.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 3.6e-25 118.2 169 43.2
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 4.7e-25 117.9 197 40.1
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 8.0e-25 117.1 193 40.4
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 1.0e-24 116.7 175 41.7
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 1.0e-24 116.7 176 40.9
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 1.4e-24 116.3 192 40.6
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 6.8e-24 114.0 196 38.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 6.8e-24 114.0 197 39.1
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 8.9e-24 113.6 152 44.1
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 1.5e-23 112.8 151 45.7
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 3.4e-23 111.7 176 40.9
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 4.4e-23 111.3 176 39.2
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 4.4e-23 111.3 94 64.9
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 5.7e-23 110.9 197 39.1
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 7.5e-23 110.5 146 44.5
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 9.8e-23 110.2 172 38.4
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 9.8e-23 110.2 195 37.4
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.3e-22 109.8 153 44.4
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.7e-22 109.4 174 39.7
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 2.2e-22 109.0 176 41.5
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 2.2e-22 109.0 177 39.5
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 6.3e-22 107.5 154 42.9
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 3.1e-21 105.1 148 40.5
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 3.1e-21 105.1 197 35.5
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.1e-21 105.1 175 37.1
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 4.1e-21 104.8 198 35.4
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 5.4e-21 104.4 198 35.9
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 5.4e-21 104.4 198 35.9
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 9.2e-21 103.6 190 36.3
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 9.2e-21 103.6 156 40.4
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 1.2e-20 103.2 194 35.1
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 1.6e-20 102.8 182 38.5
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 2.0e-20 102.4 195 35.9
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.7e-20 102.1 197 34.5
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.5e-20 101.7 199 35.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 4.5e-20 101.3 177 36.7
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 7.8e-20 100.5 174 37.4
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 7.8e-20 100.5 174 37.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 7.8e-20 100.5 199 36.7
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 1.0e-19 100.1 172 37.2
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 1.0e-19 100.1 195 36.4
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 1.0e-19 100.1 174 37.4
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 1.3e-19 99.8 196 34.7
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.7e-19 99.4 197 34.5
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 2.3e-19 99.0 173 37.0
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 3.8e-19 98.2 191 35.1
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 3.8e-19 98.2 154 41.6
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 6.6e-19 97.4 198 34.3
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 6.6e-19 97.4 198 34.3
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 6.6e-19 97.4 198 32.8
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 8.6e-19 97.1 204 33.8
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 1.1e-18 96.7 196 33.7
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 1.1e-18 96.7 160 38.1
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.1e-18 96.7 155 38.7
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 1.5e-18 96.3 231 32.9
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.5e-18 96.3 195 34.4
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.9e-18 95.9 195 34.4
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.9e-18 95.9 195 34.4
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.9e-18 95.9 146 41.8
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 1.9e-18 95.9 161 39.1
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 3.3e-18 95.1 160 39.4
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 3.3e-18 95.1 195 33.3
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 3.3e-18 95.1 195 33.3
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 3.3e-18 95.1 174 33.9
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 3.3e-18 95.1 174 33.9
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.3e-18 95.1 174 33.9
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 5.6e-18 94.4 191 36.1
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 7.3e-18 94.0 174 33.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 9.5e-18 93.6 184 34.2
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 1.2e-17 93.2 173 34.7
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.2e-17 93.2 150 39.3
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 1.2e-17 93.2 191 35.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 1.6e-17 92.8 199 32.2
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 1.6e-17 92.8 172 36.0
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 2.1e-17 92.4 191 35.6
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 2.1e-17 92.4 191 35.6
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 2.8e-17 92.0 192 35.4
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 3.6e-17 91.7 191 34.6
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 3.6e-17 91.7 198 32.8
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 3.6e-17 91.7 197 34.5
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 4.7e-17 91.3 191 33.5
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 4.7e-17 91.3 191 33.5
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 4.7e-17 91.3 195 33.3
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.0e-16 90.1 68 67.6
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 1.4e-16 89.7 189 34.9
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 1.4e-16 89.7 189 34.9
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 1.4e-16 89.7 197 32.5
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 1.8e-16 89.4 191 34.6
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 4.0e-16 88.2 191 33.5
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 6.8e-16 87.4 190 34.2
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 4.4e-15 84.7 197 32.0
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 7.5e-15 84.0 172 35.5
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 2.2e-14 82.4 69 56.5
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 2.9e-14 82.0 153 35.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 4.9e-14 81.3 57 66.7
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 8.3e-14 80.5 65 60.0
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 1.4e-13 79.7 124 39.5
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 3.5e-12 75.1 68 57.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 1.3e-11 73.2 149 33.6
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 1.3e-11 73.2 150 34.7
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 3.0e-11 72.0 52 67.3
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 8.6e-11 70.5 62 58.1
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 1.9e-10 69.3 139 34.5
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 5.6e-10 67.8 53 62.3
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.1e-09 65.9 33 93.9
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.8e-08 62.8 33 90.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 1.3e-06 56.6 45 60.0
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.4e-06 54.3 33 78.8


User provided reference genes

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