Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 7.8e-55 216.9 107 100.0
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 90.7
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 91.6
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 90.7
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 90.7
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 90.7
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 90.7
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 90.7
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 90.7
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 90.7
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 3.2e-48 194.9 105 90.5
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 86.9
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 88.8
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 88.8
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 88.8
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 86.9
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 87.9
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 87.9
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 87.9
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 87.9
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 86.0
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 4.6e-47 191.0 106 85.8
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 4.6e-47 191.0 106 85.8
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 4.6e-47 191.0 106 85.8
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 4.6e-47 191.0 107 88.8
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 86.0
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 86.0
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 86.0
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 87.9
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 87.9
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 86.0
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 1.0e-46 189.9 107 86.9
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 85.0
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 85.0
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 86.0
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 85.0
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 86.9
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 87.9
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 86.0
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 86.9
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 85.0
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.3e-46 189.5 107 86.0
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 84.1
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 85.0
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 1.7e-46 189.1 104 86.5
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 85.0
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 1.7e-46 189.1 104 86.5
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 85.0
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.9
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.9
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.0
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.0
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 85.0
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.0
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.9
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.9
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.0
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 84.1
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 84.1
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 85.0
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 84.1
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 85.0
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 84.1
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 85.0
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 85.0
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 86.0
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 86.0
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 85.0
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 85.0
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 5.1e-46 187.6 107 86.0
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 6.6e-46 187.2 107 84.1
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 85.0
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 85.0
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 86.0
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 86.0
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 83.2
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 85.0
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.9e-45 185.7 107 85.0
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.9e-45 185.7 107 85.0
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 85.0
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 85.0
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 85.0
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 83.2
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 84.1
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 7.3e-45 183.7 106 84.0
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 83.2
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 83.2
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 2.8e-44 181.8 107 84.1
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 6.2e-44 180.6 107 80.4
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 6.2e-44 180.6 104 82.7
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 8.1e-44 180.3 107 82.2
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 8.1e-44 180.3 107 82.2
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 8.1e-44 180.3 117 79.5
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 81.3
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 82.2
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 82.2
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 81.3
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 82.2
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 81.3
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.8e-43 179.1 107 82.2
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 2.4e-43 178.7 106 80.2
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.4e-43 178.7 123 75.6
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 5.2e-43 177.6 107 81.3
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 5.2e-43 177.6 107 80.4
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.5e-42 176.0 107 78.5
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.0e-42 175.6 107 80.4
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.0e-42 175.6 107 80.4
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 2.6e-42 175.3 107 78.5
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 3.4e-42 174.9 107 79.4
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 3.4e-42 174.9 133 69.9
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.3e-41 172.9 104 77.9
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 2.9e-41 171.8 107 76.6
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 4.9e-41 171.0 93 88.2
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 8.4e-41 170.2 106 74.5
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 1.4e-40 169.5 104 77.9
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 7.1e-40 167.2 107 78.5
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 1.6e-39 166.0 104 75.0
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 2.7e-39 165.2 93 86.0
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 7.8e-39 163.7 107 72.9
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 2.8e-36 155.2 107 72.9
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 3.6e-36 154.8 98 74.5
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 2.4e-35 152.1 165 53.9
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.9e-33 145.2 107 58.9
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 2.9e-33 145.2 83 83.1
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 59.8
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 3.8e-33 144.8 107 59.8
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 6.4e-33 144.1 104 63.5
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.4e-32 142.9 104 62.5
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 4.2e-32 141.4 107 69.2
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.1e-29 133.3 71 88.7
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 1.1e-29 133.3 104 57.7
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 2.2e-25 119.0 107 55.1
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 4.6e-23 111.3 107 54.2
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 2.3e-22 109.0 93 59.1
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 9.6e-21 103.6 60 88.3
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 9.6e-21 103.6 100 49.0
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 9.6e-21 103.6 60 88.3
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 2.8e-20 102.1 66 74.2
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 3.7e-20 101.7 105 42.9
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 3.7e-20 101.7 60 86.7
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 4.8e-20 101.3 69 75.4
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.1e-19 100.1 60 83.3
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 45.9
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 8.4e-17 90.5 107 53.3
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 8.4e-17 90.5 107 53.3
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 2.4e-16 89.0 78 60.3
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 6.7e-14 80.9 62 67.7
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 1.9e-13 79.3 51 76.5
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 3.3e-13 78.6 100 36.0
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 1.0e-09 67.0 92 32.6
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.3e-09 66.6 46 69.6
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 1.1e-08 63.5 34 79.4
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 3.0e-06 55.5 36 77.8
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 5.1e-06 54.7 67 49.3
Zm00001eb072320 Zea mays HOM05D001366 ORTHO05D446550 8.7e-06 53.9 42 57.1


User provided reference genes

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