Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38392 Trifolium pratense HOM05D000964 ORTHO05D004047 1.5e-43 179.1 88 100.0
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 2.9e-31 138.3 79 86.1
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 6.0e-29 130.6 84 77.4
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 6.0e-29 130.6 84 77.4
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 6.0e-29 130.6 84 77.4
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 1.0e-28 129.8 84 78.6
Psat7g045240 Pisum sativum HOM05D000964 ORTHO05D004047 1.3e-28 129.4 79 79.7
MELO3C000951.2 Cucumis melo HOM05D000964 ORTHO05D004047 5.1e-28 127.5 84 76.2
MELO3C027953.2 Cucumis melo HOM05D000964 ORTHO05D004047 5.1e-28 127.5 84 76.2
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 3.3e-27 124.8 84 76.2
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 1.3e-26 122.9 79 77.2
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 1.3e-26 122.9 79 77.2
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 1.3e-26 122.9 79 77.2
Psat4g041120 Pisum sativum HOM05D000964 ORTHO05D004047 3.7e-26 121.3 78 75.6
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 6.2e-26 120.6 84 73.8
Peaxi162Scf00527g00039 Petunia axillaris HOM05D000964 ORTHO05D004047 6.2e-26 120.6 84 75.0
Peaxi162Scf00705g00612 Petunia axillaris HOM05D000964 ORTHO05D004047 6.2e-26 120.6 84 75.0
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 6.2e-26 120.6 84 75.0
Cpa.g.c42072 Carica papaya HOM05D000964 ORTHO05D004047 8.2e-26 120.2 84 75.0
Nn002s41359 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.2e-26 120.2 84 73.8
Nn070s42369 Nelumbo nucifera HOM05D000964 ORTHO05D004047 8.2e-26 120.2 84 73.8
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 8.2e-26 120.2 79 75.9
Atru.chr12.312 Acer truncatum HOM05D000964 ORTHO05D004047 1.1e-25 119.8 81 74.1
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 1.4e-25 119.4 87 71.3
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 1.8e-25 119.0 79 74.7
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 2.4e-25 118.6 84 73.8
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 2.4e-25 118.6 84 72.6
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 72.6
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 72.6
Gohir.D02G179050 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 72.6
Hund08803 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 71.4
Hund29571 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 71.4
Hund29611 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 71.4
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 71.4
Hund30271 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 71.4
Hund31408 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.1e-25 118.2 84 71.4
Nn049s41916 Nelumbo nucifera HOM05D000964 ORTHO05D004047 4.0e-25 117.9 84 72.6
arahy.Tifrunner.gnm1.ann1.YUC9G4 Arachis hypogaea HOM05D000964 ORTHO05D004047 5.3e-25 117.5 84 72.6
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 6.9e-25 117.1 84 71.4
Hma1.2p1_0818F.1_g223330 Hydrangea macrophylla HOM05D000964 ORTHO05D004047 6.9e-25 117.1 84 71.4
MELO3C033568.2 Cucumis melo HOM05D000964 ORTHO05D004047 9.0e-25 116.7 83 69.9
Gohir.A09G245632 Gossypium hirsutum HOM05D000964 ORTHO05D004047 9.0e-25 116.7 77 76.6
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 9.0e-25 116.7 84 73.8
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 9.0e-25 116.7 84 73.8
PGSC0003DMG400002472 Solanum tuberosum HOM05D000964 ORTHO05D004047 1.2e-24 116.3 84 72.6
Nn5g30296 Nelumbo nucifera HOM05D000964 ORTHO05D004047 1.5e-24 115.9 87 69.0
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 2.0e-24 115.5 77 75.3
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.6e-24 115.2 84 71.4
Nitab4.5_0020737g0020 Nicotiana tabacum HOM05D000964 ORTHO05D004047 2.6e-24 115.2 87 67.8
Nitab4.5_0001564g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 4.5e-24 114.4 87 67.8
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 7.6e-24 113.6 84 65.5
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 1.0e-23 113.2 84 70.2
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.0e-23 113.2 77 75.3
Lj2C1239T2 Lonicera japonica HOM05D000964 ORTHO05D004047 1.0e-23 113.2 84 69.0
Lj2P1237T122 Lonicera japonica HOM05D000964 ORTHO05D004047 1.0e-23 113.2 84 69.0
Lju5009P0T55 Lonicera japonica HOM05D000964 ORTHO05D004047 1.0e-23 113.2 84 69.0
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 1.3e-23 112.8 84 71.4
Oeu012810.1 Olea europaea HOM05D000964 ORTHO05D004047 1.7e-23 112.5 84 71.4
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 2.2e-23 112.1 70 78.6
EL10As12g24034 Beta vulgaris HOM05D000964 ORTHO05D004047 2.2e-23 112.1 84 69.0
Gohir.A05G326924 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.2e-23 112.1 84 70.2
PGSC0003DMG400003335 Solanum tuberosum HOM05D000964 ORTHO05D004047 2.2e-23 112.1 87 69.0
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 2.9e-23 111.7 84 65.5
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 2.9e-23 111.7 84 65.5
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 6.5e-23 110.5 84 67.9
Gorai.010G120000 Gossypium raimondii HOM05D000964 ORTHO05D004047 8.4e-23 110.2 74 75.7
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 1.1e-22 109.8 84 67.9
BNapus_Darmor_BZH_scaffold_253p00330 Brassica napus HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
BolSC29t60485H Brassica oleracea HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
BolSC29t60607H Brassica oleracea HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
BolSC49t61165H Brassica oleracea HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 1.9e-22 109.0 84 63.1
EL10Ac4g07915 Beta vulgaris HOM05D000890 ORTHO05D000697 2.5e-22 108.6 85 67.1
BolSC46t61018H Brassica oleracea HOM05D000964 ORTHO05D004047 2.5e-22 108.6 83 63.9
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr00c0394g0574561 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-22 108.6 84 67.9
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 4.2e-22 107.8 84 69.0
Psat5g068400 Pisum sativum HOM05D000964 ORTHO05D004047 4.2e-22 107.8 67 73.1
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 5.5e-22 107.5 84 66.7
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 5.5e-22 107.5 84 66.7
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 5.5e-22 107.5 84 66.7
Psat5g206600 Pisum sativum HOM05D000964 ORTHO05D004047 5.5e-22 107.5 62 83.9
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 9.3e-22 106.7 84 66.7
Gorai.004G205100 Gossypium raimondii HOM05D000964 ORTHO05D004047 9.3e-22 106.7 87 62.1
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.2e-21 106.3 72 75.0
BraSC58t46500Z Brassica rapa HOM05D000964 ORTHO05D004047 3.5e-21 104.8 73 68.5
Lsat_1_v5_gn_5_50401 Lactuca sativa HOM05D000964 ORTHO05D004047 4.6e-21 104.4 84 65.5
Gorai.013G106800 Gossypium raimondii HOM05D000964 ORTHO05D004047 1.0e-20 103.2 87 63.2
HanXRQChr11g0345261 Helianthus annuus HOM05D000964 ORTHO05D004047 1.0e-20 103.2 84 65.5
Zm00001eb255890 Zea mays HOM05D000964 ORTHO05D004047 1.8e-20 102.4 66 77.3
Zm00001eb434880 Zea mays HOM05D000964 ORTHO05D004047 1.8e-20 102.4 66 77.3
Zm00001eb435090 Zea mays HOM05D000964 ORTHO05D004047 1.8e-20 102.4 66 77.3
Zm00001eb435140 Zea mays HOM05D000964 ORTHO05D004047 1.8e-20 102.4 66 77.3
Zm00001eb435360 Zea mays HOM05D000964 ORTHO05D004047 1.8e-20 102.4 66 77.3
Oeu064090.1 Olea europaea HOM05D000964 ORTHO05D004047 2.3e-20 102.1 84 65.5
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.9e-20 101.3 91 61.5
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.9e-20 101.3 91 61.5
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.9e-20 101.3 91 61.5
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 5.1e-20 100.9 78 66.7
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 6.7e-20 100.5 82 63.4
HanXRQChr10g0303891 Helianthus annuus HOM05D000964 ORTHO05D004047 6.7e-20 100.5 84 63.1
HanXRQChr02g0052621 Helianthus annuus HOM05D000964 ORTHO05D003870 1.1e-19 99.8 69 73.9
Nitab4.5_0004376g0120 Nicotiana tabacum HOM05D000964 ORTHO05D004047 1.1e-19 99.8 79 69.6
Gohir.A12G228525 Gossypium hirsutum HOM05D000964 ORTHO05D004047 4.3e-19 97.8 67 73.1
HanXRQChr03g0068101 Helianthus annuus HOM05D000964 ORTHO05D004047 7.4e-19 97.1 65 76.9
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 1.3e-18 96.3 82 62.2
Hund07962 Selenicereus undatus HOM05D000964 ORTHO05D004047 2.8e-18 95.1 84 60.7
Lalb_Chr20g0115411 Lupinus albus HOM05D000964 ORTHO05D004047 3.7e-18 94.7 73 67.1
BNapus_Darmor_BZH_scaffold_287p00260 Brassica napus HOM05D000964 ORTHO05D004047 8.2e-18 93.6 63 71.4
Solyc01g017440.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 8.2e-18 93.6 74 64.9
Hund08596 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.1e-17 93.2 84 63.1
Psat6g111000 Pisum sativum HOM05D000964 ORTHO05D004047 9.0e-17 90.1 55 78.2
Atru.chr12.2306 Acer truncatum HOM05D000964 ORTHO05D004047 3.4e-16 88.2 72 63.9
Gohir.D08G145550 Gossypium hirsutum HOM05D000964 ORTHO05D003870 3.4e-16 88.2 62 71.0
Solyc00g500157.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.4e-16 88.2 84 60.7
Solyc09g050062.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.4e-16 88.2 84 60.7
Gorai.004G150700 Gossypium raimondii HOM05D000964 ORTHO05D003870 5.9e-16 87.4 62 71.0
Medtr1g070860 Medicago truncatula HOM05D000964 ORTHO05D004047 2.2e-15 85.5 77 61.0
CsaV3_3G019080 Cucumis sativus L. HOM05D000964 ORTHO05D004047 2.9e-15 85.1 61 70.5
arahy.Tifrunner.gnm1.ann1.Z4WADK Arachis hypogaea HOM05D000964 ORTHO05D004047 6.5e-15 84.0 60 71.7
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.1e-14 83.2 77 55.8
RcHm_v2.0_Chr5g0083591 Rosa chinensis HOM05D000964 ORTHO05D004047 1.4e-14 82.8 52 84.6
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.4e-14 82.8 77 55.8
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.4e-14 82.8 77 55.8
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.4e-14 82.8 77 55.8
SEGI_31867 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.4e-14 82.8 77 55.8
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 1.4e-14 82.8 77 55.8
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.4e-14 82.8 77 55.8
Duzib165G0005 Durio zibethinus HOM05D000964 ORTHO05D004047 1.9e-14 82.4 58 72.4
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.2e-14 81.3 77 54.5
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 5.5e-14 80.9 84 51.2
EL10Ac4g08559 Beta vulgaris HOM05D000964 ORTHO05D004047 1.2e-13 79.7 57 71.9
TWI75G0222 Tripterygium wilfordii HOM05D000964 ORTHO05D004047 1.6e-13 79.3 56 69.6
Gohir.D02G103150 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.1e-13 79.0 61 63.9
Gorai.005G117200 Gossypium raimondii HOM05D000964 ORTHO05D004047 2.7e-13 78.6 61 62.3
HanXRQChr08g0207991 Helianthus annuus HOM05D000964 ORTHO05D003870 2.7e-13 78.6 50 80.0
BolSC35t60667H Brassica oleracea HOM05D000964 ORTHO05D004047 2.3e-12 75.5 50 72.0
HanXRQChr11g0321081 Helianthus annuus HOM05D000964 ORTHO05D004047 2.5e-11 72.0 58 63.8
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.5e-11 72.0 77 50.6
Gohir.D03G062001 Gossypium hirsutum HOM05D000964 ORTHO05D004047 7.4e-11 70.5 48 75.0
HanXRQChr15g0486541 Helianthus annuus HOM05D000964 ORTHO05D004047 1.7e-10 69.3 82 47.6
Oeu012812.1 Olea europaea HOM05D000964 ORTHO05D004047 2.2e-10 68.9 58 62.1
Pp3c5_15590 Physcomitrium patens HOM05D000964 ORTHO05D004047 3.7e-10 68.2 72 48.6
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 3.7e-10 68.2 53 64.2
CAN.G413.1 Capsicum annuum HOM05D000964 ORTHO05D003870 6.3e-10 67.4 44 79.5
SMO086G0025 Selaginella moellendorffii HOM05D000964 ORTHO05D004047 6.3e-10 67.4 85 44.7
BraSC59t46573Z Brassica rapa HOM05D000964 ORTHO05D004047 8.2e-10 67.0 49 65.3
Manes.09G008550 Manihot esculenta HOM05D000964 ORTHO05D004047 9.1e-09 63.5 46 71.7
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 2.2e-07 58.9 38 78.9
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 5.0e-07 57.8 87 43.7
Nitab4.5_0000014g0500 Nicotiana tabacum HOM05D000964 ORTHO05D004047 5.0e-07 57.8 49 59.2


User provided reference genes

Program Settings