Gene: Pp3c5_15590
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c5_15590
- Transcript Identifier Pp3c5_15590V3.2
- Gene Type Coding gene
- Location Chr05 : 10908245-10909812 : positive
Gene Family Information
- ID HOM05D000964
- #Genes/#Species 620/77
- Phylogenetic origin
- ID ORTHO05D004047
- #Genes/#Species 193/56
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c5_15590V3.2
- pacid 32955613
- alias Phypa_168194
- alias Phpat.005G059300
- alias Pp1s169_65V6
- uniprot P60315
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | ISO | PLAZA Homology (enrichment) | translation | HOM05D000964 |
| GO:0006354 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, elongation | ATCG00740 |
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046983 | IEA | GOA Database | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003735 | ISO | PLAZA Homology (enrichment) | structural constituent of ribosome | HOM05D000964 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | ATCG00740 |
| GO:0005840 | ISO | PLAZA Homology (enrichment) | ribosome | HOM05D000964 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | ATCG00740 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | ATCG00740 |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009507 | IEA | GOA Database | chloroplast |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011263 | DNA-directed RNA polymerase, RpoA/D/Rpb3-type |
| IPR011773 | DNA-directed RNA polymerase, alpha subunit |
| IPR036603 | RNA polymerase, RBP11-like subunit |
| IPR036643 | DNA-directed RNA polymerase, insert domain superfamily |
| IPR011260 | RNA polymerase, alpha subunit, C-terminal |
| IPR011262 | DNA-directed RNA polymerase, insert domain |
| Mapman id | Description |
|---|---|
| 15.6.1.2.1.1 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoA |