Gene: RcHm_v2.0_CPg0501901
General Information
Structural Information
- Species Rosa chinensis
- Gene Identifier RcHm_v2.0_CPg0501901
- Transcript Identifier RcHm_v2.0_CPg0501901
- Gene Type Coding gene
- Location RcHm_v2.0_CP : 32205-33676 : positive
Gene Family Information
- ID HOM05D000964
- #Genes/#Species 620/77
- Phylogenetic origin
- ID ORTHO05D004047
- #Genes/#Species 193/56
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006412 | IEA | InterPro | translation | |
| GO:0006354 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, elongation | ATCG00740 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00750 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | ATCG00740 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG00740 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | ATCG00740 |
| GO:0000312 | ISO | PLAZA Integrative Orthology | plastid small ribosomal subunit | ATCG00750 |
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | ATCG00740 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011262 | DNA-directed RNA polymerase, insert domain |
| IPR001971 | Ribosomal protein S11 |
| IPR036643 | DNA-directed RNA polymerase, insert domain superfamily |
| IPR011263 | DNA-directed RNA polymerase, RpoA/D/Rpb3-type |
| IPR011773 | DNA-directed RNA polymerase, alpha subunit |
| IPR036603 | RNA polymerase, RBP11-like subunit |
| IPR036967 | Ribosomal protein S11 superfamily |
| IPR019981 | Ribosomal protein S11, bacterial-type |
| IPR011260 | RNA polymerase, alpha subunit, C-terminal |
| Mapman id | Description |
|---|---|
| 15.6.1.2.1.1 | RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components.core component RpoA |
| 17.7.2.2.11 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS11 |