Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1884.4 966 100.0
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1800.8 969 94.2
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1788.1 969 92.9
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1743.0 967 90.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1732.2 967 88.8
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1728.0 968 89.3
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1713.7 967 88.0
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1704.1 967 88.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1697.2 967 87.6
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1694.5 966 86.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1685.2 970 86.3
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1668.7 1000 83.8
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1590.5 971 81.9
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1585.5 970 81.4
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1583.5 972 81.3
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1573.5 972 81.1
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1573.1 970 81.2
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1568.5 970 80.9
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 970 80.8
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1567.0 970 80.0
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1566.2 970 80.6
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1565.4 970 80.6
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1560.4 971 79.4
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1559.7 959 81.3
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 959 80.9
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1550.8 959 81.1
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 971 79.8
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1550.4 971 79.8
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1548.1 959 80.8
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1547.7 842 93.2
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1544.6 970 79.9
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1543.1 970 78.4
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1541.9 969 80.1
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1540.0 970 80.1
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1537.7 951 80.1
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 971 79.2
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1535.8 956 80.0
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 969 79.3
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 969 78.6
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1533.1 962 79.8
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 970 78.9
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1530.0 969 78.5
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1528.8 954 80.1
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 968 79.1
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1528.1 958 79.0
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 970 78.7
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 954 80.0
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1525.8 948 80.1
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1525.8 970 77.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1525.0 954 79.8
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1522.3 968 77.9
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1520.4 970 77.5
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 954 79.5
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1517.3 974 77.8
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1514.6 954 79.4
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 971 77.0
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 968 76.8
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1506.1 968 77.3
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1505.7 966 77.8
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1501.1 968 77.0
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1500.3 970 76.8
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 970 76.5
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1495.7 970 76.0
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1495.3 968 77.0
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1486.5 970 76.5
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 967 76.8
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1483.4 968 76.3
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 950 76.8
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1478.8 950 76.8
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 950 76.3
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1468.8 950 76.1
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1468.0 963 76.5
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1467.6 960 75.8
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 972 74.7
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 948 76.2
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 950 75.9
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 950 75.9
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1464.1 950 75.9
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 951 76.1
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 964 76.2
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1460.7 950 75.7
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1460.7 953 76.1
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1458.7 971 76.0
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1457.6 972 74.1
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1456.8 964 75.4
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 953 75.7
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1455.3 973 75.3
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1454.9 952 76.4
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1454.1 971 75.8
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1452.6 952 75.8
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1451.0 971 75.2
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1450.6 958 75.4
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1449.5 967 75.3
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1449.1 986 74.5
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1448.7 971 76.2
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1448.3 953 75.4
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 974 75.6
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 970 74.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1443.7 966 74.1
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1422.5 978 74.4
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1419.8 963 73.4
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1379.4 961 70.6
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1379.4 961 70.7
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1375.5 966 72.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1373.6 841 81.6
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1336.2 733 88.8
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1318.5 954 69.1
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1303.1 975 67.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1282.3 862 74.4
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1278.1 958 69.6
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1196.4 969 64.7
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1143.3 970 59.6
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1141.7 1008 57.8
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1119.4 703 79.4
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1100.9 1031 56.0
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 6.6e-312 1074.3 950 58.7
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.7e-310 1069.3 677 79.0
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.0e-307 1060.1 641 81.4
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 2.3e-270 936.0 700 67.0
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 9.1e-219 764.6 758 52.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.0e-206 724.5 472 75.6
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.1e-179 634.8 444 70.7
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-124 451.8 312 68.9
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 4.8e-111 406.8 1315 24.6
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.2e-106 392.1 641 38.5
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.8e-94 351.7 208 83.2
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.2e-72 279.3 209 68.9
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.7e-55 222.2 183 63.4
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.0e-53 215.3 300 43.0
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.4e-48 198.0 118 82.2
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 4.0e-41 174.5 118 72.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.4e-40 171.4 201 44.8
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 5.4e-38 164.1 139 61.2
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.5e-24 119.4 57 93.0
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.2e-16 93.2 80 62.5


User provided reference genes

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