Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 3.9e-29 130.6 57 100.0
TPR.G19476 Trifolium pratense HOM05D009291 ORTHO05D010716 1.1e-10 69.3 32 93.8
TPR.G24693 Trifolium pratense HOM05D009291 ORTHO05D010716 4.1e-10 67.4 33 87.9
TPR.G28285 Trifolium pratense HOM05D009291 ORTHO05D010716 4.5e-09 63.9 32 84.4
Medtr0002s1270 Medicago truncatula HOM05D009291 ORTHO05D010716 1.0e-08 62.8 33 75.8
Medtr5g077900 Medicago truncatula HOM05D009291 ORTHO05D010716 1.0e-08 62.8 33 75.8
Medtr7g046380 Medicago truncatula HOM05D009291 ORTHO05D010716 1.0e-08 62.8 33 75.8
TPR.G30779 Trifolium pratense HOM05D009291 ORTHO05D010716 2.2e-08 61.6 33 78.8
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 6.5e-08 60.1 29 86.2
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 6.5e-08 60.1 29 86.2
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 6.5e-08 60.1 29 86.2
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 6.5e-08 60.1 29 86.2
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 6.5e-08 60.1 29 86.2
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 8.5e-08 59.7 29 82.8
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 8.5e-08 59.7 25 100.0
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.4e-07 58.9 29 82.8
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 1.9e-07 58.5 29 82.8
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.9e-07 58.5 29 82.8
Medtr0057s0200 Medicago truncatula HOM05D009291 ORTHO05D010716 1.9e-07 58.5 29 79.3
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.9e-07 58.5 29 82.8
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.9e-07 58.5 29 82.8
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.9e-07 58.5 25 96.0
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 1.9e-07 58.5 29 82.8
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 1.9e-07 58.5 34 73.5
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.9e-07 58.5 29 82.8
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.9e-07 58.5 29 82.8
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
TPR.G22867 Trifolium pratense HOM05D009291 ORTHO05D010716 2.5e-07 58.2 33 75.8
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.5e-07 58.2 29 82.8
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.2e-07 57.8 29 79.3
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 3.2e-07 57.8 29 79.3
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 3.2e-07 57.8 29 79.3
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 3.2e-07 57.8 29 79.3
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 3.2e-07 57.8 24 100.0
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 3.2e-07 57.8 25 96.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 4.2e-07 57.4 25 96.0
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 5.5e-07 57.0 29 79.3
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 5.5e-07 57.0 29 79.3
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 5.5e-07 57.0 29 79.3
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 5.5e-07 57.0 29 79.3
Medtr4g066300 Medicago truncatula HOM05D009291 ORTHO05D010716 5.5e-07 57.0 33 69.7
TPR.G10668 Trifolium pratense HOM05D022099 ORTHO05D010716 5.5e-07 57.0 33 75.8
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 5.5e-07 57.0 29 82.8
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 82.8
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 7.2e-07 56.6 24 95.8
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 7.2e-07 56.6 24 95.8
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 7.2e-07 56.6 24 95.8
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 75.9
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 7.2e-07 56.6 24 95.8
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 7.2e-07 56.6 24 95.8
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 75.9
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 75.9
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 79.3
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 79.3
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 79.3
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 79.3
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 79.3
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 7.2e-07 56.6 29 79.3
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 9.4e-07 56.2 29 79.3
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 9.4e-07 56.2 29 79.3
TPR.G40662 Trifolium pratense HOM05D009291 ORTHO05D010716 9.4e-07 56.2 30 80.0
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 1.2e-06 55.8 29 79.3
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.2e-06 55.8 29 79.3
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.2e-06 55.8 29 79.3
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.2e-06 55.8 29 75.9
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.2e-06 55.8 29 79.3
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.6e-06 55.5 29 79.3
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.6e-06 55.5 29 72.4
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.6e-06 55.5 29 79.3
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 1.6e-06 55.5 24 91.7
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.1e-06 55.1 29 79.3
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 2.1e-06 55.1 25 88.0
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.1e-06 55.1 25 88.0
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.1e-06 55.1 25 88.0
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.1e-06 55.1 24 91.7
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 2.1e-06 55.1 29 79.3
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.1e-06 55.1 29 79.3
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 2.1e-06 55.1 29 75.9
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.1e-06 55.1 25 92.0
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.6e-06 54.3 29 75.9
Medtr4g066320 Medicago truncatula HOM05D009291 ORTHO05D010716 3.6e-06 54.3 31 67.7
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.6e-06 54.3 24 91.7
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 4.7e-06 53.9 29 75.9
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 6.1e-06 53.5 25 88.0
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 7.9e-06 53.1 24 87.5
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 7.9e-06 53.1 29 72.4


User provided reference genes

Program Settings