Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 6.0e-36 154.5 136 100.0
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.2e-28 130.2 134 70.1
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 3.5e-28 128.6 154 68.2
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 2.3e-27 125.9 155 67.1
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 5.7e-26 121.3 134 87.3
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.5e-22 107.5 134 83.6
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 1.6e-20 103.2 79 64.6
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 1.6e-20 103.2 79 64.6
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.9e-18 96.3 134 63.4
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 5.7e-18 94.7 134 65.7
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.8e-17 92.4 134 64.9
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.8e-17 92.4 134 64.9
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 6.3e-17 91.3 134 79.9
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 9.1e-16 87.4 134 76.1
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.5e-15 86.7 134 61.9
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 2.0e-15 86.3 134 71.6
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.0e-15 86.3 134 66.4
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 5.9e-15 84.7 134 61.9
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 7.7e-15 84.3 134 73.9
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 7.7e-15 84.3 134 75.4
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.7e-14 83.2 134 65.7
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.7e-14 83.2 134 61.2
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 2.2e-14 82.8 134 70.9
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 2.2e-14 82.8 134 61.2
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.2e-14 82.8 134 76.1
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 3.8e-14 82.0 134 73.9
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 5.0e-14 81.6 134 74.6
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 6.5e-14 81.3 134 61.2
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 8.5e-14 80.9 134 73.1
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.1e-13 80.5 134 61.2
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 1.1e-13 80.5 134 71.6
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.4e-13 80.1 127 60.6
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 1.4e-13 80.1 134 72.4
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 2.5e-13 79.3 134 70.1
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 2.5e-13 79.3 134 60.4
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 2.5e-13 79.3 87 69.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 2.5e-13 79.3 87 69.0
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 2.5e-13 79.3 87 69.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.2e-13 79.0 134 75.4
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.2e-13 79.0 134 75.4
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 3.2e-13 79.0 134 75.4
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 3.2e-13 79.0 134 75.4
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.2e-13 79.0 134 75.4
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 4.2e-13 78.6 134 73.9
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 5.5e-13 78.2 134 74.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 5.5e-13 78.2 134 73.9
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 7.2e-13 77.8 134 74.6
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 7.2e-13 77.8 134 74.6
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 9.4e-13 77.4 134 76.1
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 9.4e-13 77.4 134 68.7
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.2e-12 77.0 134 70.9
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.2e-12 77.0 134 74.6
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.6e-12 76.6 134 54.5
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.6e-12 76.6 134 75.4
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.6e-12 76.6 134 73.9
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.6e-12 76.6 134 73.9
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.6e-12 76.6 134 74.6
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.6e-12 76.6 134 73.1
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.6e-12 76.6 87 67.8
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 2.1e-12 76.3 134 73.1
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.6e-12 75.5 134 73.1
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 3.6e-12 75.5 134 72.4
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 4.7e-12 75.1 134 70.9
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 4.7e-12 75.1 134 70.9
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 6.1e-12 74.7 134 65.7
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 6.1e-12 74.7 134 70.1
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 7.9e-12 74.3 134 72.4
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 70.9
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 70.9
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 70.9
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 70.9
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 70.9
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 74.6
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 67.9
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-11 73.9 87 69.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-11 73.9 87 69.0
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.0e-11 73.9 134 71.6
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.4e-11 73.6 134 70.9
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.4e-11 73.6 134 73.1
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.8e-11 73.2 134 72.4
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.3e-11 72.8 35 94.3
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 3.0e-11 72.4 134 74.6
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.9e-11 72.0 134 72.4
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 5.1e-11 71.6 134 67.2
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 6.7e-11 71.2 134 73.9
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 8.8e-11 70.9 134 70.9
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.1e-10 70.5 134 57.5
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.5e-10 70.1 134 73.1
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.5e-10 70.1 134 58.2
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.5e-10 70.1 134 70.9
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.0e-10 69.7 134 67.2
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 2.0e-10 69.7 134 67.2
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.4e-10 68.6 134 72.4
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.3e-09 67.0 134 71.6
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.7e-09 66.6 134 69.4
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.2e-09 66.2 134 72.4
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.8e-09 65.9 134 58.2
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 3.7e-09 65.5 134 56.7
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 3.7e-09 65.5 134 56.7
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 6.3e-09 64.7 40 72.5
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 8.2e-09 64.3 88 60.2
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.4e-08 63.5 134 72.4
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.4e-08 63.5 134 72.4
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.8e-08 63.2 135 64.4
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.8e-08 63.2 134 70.9
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 3.1e-08 62.4 134 68.7
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.1e-08 62.0 134 71.6
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 7.0e-08 61.2 134 70.1
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 9.1e-08 60.8 134 55.2
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 9.1e-08 60.8 134 59.0
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 3.4e-07 58.9 134 32.1
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 5.9e-07 58.2 30 86.7
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 5.9e-07 58.2 134 63.4
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.0e-06 57.4 35 77.1
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.3e-06 57.0 134 63.4
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.9e-06 55.8 88 62.5


User provided reference genes

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