Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G291 Trifolium pratense HOM05D002199 ORTHO05D004947 1.4e-32 142.1 63 100.0
Hund05416 Selenicereus undatus HOM05D002199 ORTHO05D004947 4.5e-18 94.0 58 72.4
Atru.chr5.1170 Acer truncatum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Atru.chr5.2688 Acer truncatum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Actinidia21055 Actinidia chinensis HOM05D000147 ORTHO05D001254 5.9e-18 93.6 58 72.4
Aa31LG5G15860 Aethionema arabicum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
ATR0796G324 Amborella trichopoda HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
AagrBONN_evm.TU.Sc2ySwM_228.5267 Anthoceros agrestis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Aqoxy2G02974 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Aqoxy5G00738 Aquilegia oxysepala HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
AL6G39230 Arabidopsis lyrata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
AT5G27720 Arabidopsis thaliana HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
arahy.Tifrunner.gnm1.ann1.BKDY12 Arachis hypogaea HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
MSTRG.16392 Avicennia marina HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
MSTRG.21624 Avicennia marina HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
EL10Ac7g17474 Beta vulgaris HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
BcaB04g19685 Brassica carinata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
BcaC04g23643 Brassica carinata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
A06p37360 Brassica napus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
A09p05420 Brassica napus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
C07p41100 Brassica napus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
C09p05900 Brassica napus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
BolC7t44637H Brassica oleracea HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
BolC9t53516H Brassica oleracea HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
BraA06t26659Z Brassica rapa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
BraA09t36180Z Brassica rapa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CSS0007987 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CSS0020039 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CSS0029265 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CANSAT25G1293 Cannabis sativa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CANSAT25G3340 Cannabis sativa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Carub.0006s2485 Capsella rubella HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CAN.G1459.13 Capsicum annuum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CARHR186240 Cardamine hirsuta HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Cpa.g.sc9.221 Carica papaya HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CiPaw.07G107000 Carya illinoinensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CiPaw.08G096800 Carya illinoinensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.9e-18 93.6 58 72.4
CDE11G1052 Ceratophyllum demersum HOM05D005808 ORTHO05D006196 5.9e-18 93.6 58 72.4
AUR62008655 Chenopodium quinoa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
AUR62033113 Chenopodium quinoa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Ca_09150_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Ca_10348_v3 Cicer arietinum L. HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
ClCG09G010120 Citrullus lanatus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Ciclev10002769m.g Citrus clementina HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Ciclev10022685m.g Citrus clementina HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Cc02_g34160 Coffea canephora HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
COL.COLO4_23366 Corchorus olitorius HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Haze_04137 Corylus avellana HOM05D001134 ORTHO05D001035 5.9e-18 93.6 58 72.4
Haze_04909 Corylus avellana HOM05D002199 ORTHO05D007829 5.9e-18 93.6 58 72.4
MELO3C018097.2 Cucumis melo HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CsaV3_4G030890 Cucumis sativus L. HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
CsaV3_7G024630 Cucumis sativus L. HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Dinv19707 Davidia involucrata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Dinv40337 Davidia involucrata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Duzib133G1030 Durio zibethinus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Duzib211G0610 Durio zibethinus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
ECA248G3217 Erigeron canadensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Migut.D00203 Erythranthe guttata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Eucgr.K03467 Eucalyptus grandis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Thhalv10021732m.g Eutrema salsugineum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
FvH4_2g25520 Fragaria vesca HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
FAN15G0019 Fragaria x ananassa HOM05D002199 ORTHO05D007829 5.9e-18 93.6 58 72.4
FAN20G0797 Fragaria x ananassa HOM05D002199 ORTHO05D007829 5.9e-18 93.6 58 72.4
FAN24G1953 Fragaria x ananassa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
FAN27G3300 Fragaria x ananassa HOM05D002199 ORTHO05D007829 5.9e-18 93.6 58 72.4
Glyma.02G155300 Glycine max HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Glyma.03G213600 Glycine max HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Glyma.10G019100 Glycine max HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Glyma.19G210402 Glycine max HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Gohir.A08G042600 Gossypium hirsutum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Gohir.A12G131300 Gossypium hirsutum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Gohir.D08G052400 Gossypium hirsutum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Gohir.D12G135200 Gossypium hirsutum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Gorai.004G052500 Gossypium raimondii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Gorai.008G146200 Gossypium raimondii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
HanXRQChr03g0074701 Helianthus annuus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
HanXRQChr09g0248151 Helianthus annuus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Hma1.2p1_1292F.1_g273770 Hydrangea macrophylla HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Lsat_1_v5_gn_5_190620 Lactuca sativa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Lalb_Chr02g0143231 Lupinus albus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Lalb_Chr21g0306811 Lupinus albus HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
MBI18_g08110_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
MBI19_g09229_MAGBIO Magnolia biondii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
MD03G1286000 Malus domestica HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
MD11G1305900 Malus domestica HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Manes.01G217600 Manihot esculenta HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Manes.05G063400 Manihot esculenta HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Manes.09G170401 Manihot esculenta HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Mapoly0002s0139 Marchantia polymorpha HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Medtr7g108700 Medicago truncatula HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Medtr8g058420 Medicago truncatula HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Medtr8g058537 Medicago truncatula HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Medtr8g091620 Medicago truncatula HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Nn3g21455 Nelumbo nucifera HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Nn4g25821 Nelumbo nucifera HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 5.9e-18 93.6 58 72.4
Nitab4.5_0003844g0070 Nicotiana tabacum HOM05D001134 ORTHO05D001035 5.9e-18 93.6 58 72.4
Oeu048345.1 Olea europaea HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Oeu054128.1 Olea europaea HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Oeu054129.1 Olea europaea HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
PSO170G1601 Papaver somniferum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
PSO210G6647 Papaver somniferum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Peaxi162Scf00037g01217 Petunia axillaris HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Phvul.001G206200 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Phvul.007G144000 Phaseolus vulgaris HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Pp3c14_11180 Physcomitrium patens HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Psat3g021920 Pisum sativum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Potri.002G205700 Populus trichocarpa HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Prupe.8G259300 Prunus persica HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
PGR044G2002 Punica granatum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
QL12p026659 Quercus lobata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
QL12p027276 Quercus lobata HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
RcHm_v2.0_Chr6g0293731 Rosa chinensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sabra02G0153600 Salix brachista HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sabra14G0097300 Salix brachista HOM05D002199 ORTHO05D007829 5.9e-18 93.6 58 72.4
SHI15194 Sapria himalayana HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sp2g20890 Schrenkiella parvula HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sp3g04360 Schrenkiella parvula HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sed0020542 Sechium edule HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sed0021569 Sechium edule HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sc05g0004040 Simmondsia chinensis HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Solyc01g099740.4 Solanum lycopersicum HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sopen01g043260 Solanum pennellii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Sopen09g027730 Solanum pennellii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 5.9e-18 93.6 58 72.4
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 5.9e-18 93.6 58 72.4
THA.LOC104818719 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
THA.LOC104821724 Tarenaya hassleriana HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Thecc.01G298300 Theobroma cacao HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
TPR.G34004 Trifolium pratense HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
TPR.G9614 Trifolium pratense HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
TWI14G0261 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
TWI59G0539 Tripterygium wilfordii HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
TAR362G0065 Trochodendron aralioides HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
TAR455G0001 Trochodendron aralioides HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
unitig_0.g657 Utricularia gibba HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
vmacro14997 Vaccinium macrocarpon HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
HPP92_006923 Vanilla planifolia HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
VMungo0720G1966 Vigna mungo HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
GSVIVG01027986001 Vitis vinifera HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
GSVIVG01031139001 Vitis vinifera HOM05D002199 ORTHO05D004947 5.9e-18 93.6 58 72.4
Nitab4.5_0003181g0010 Nicotiana tabacum HOM05D002199 ORTHO05D004947 7.6e-18 93.2 58 70.7
Nitab4.5_0003917g0030 Nicotiana tabacum HOM05D002199 ORTHO05D004947 7.6e-18 93.2 58 70.7
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.3e-17 92.4 58 70.7
Lj1g0003572 Lotus japonicus HOM05D002199 ORTHO05D004947 1.3e-17 92.4 58 70.7
Os01g0256900 Oryza sativa ssp. japonica HOM05D002199 ORTHO05D004947 1.3e-17 92.4 58 70.7
Zm00001eb127790 Zea mays HOM05D002199 ORTHO05D004947 1.3e-17 92.4 58 70.7
Zm00001eb333500 Zea mays HOM05D002199 ORTHO05D004947 1.3e-17 92.4 58 70.7
Potri.014G130700 Populus trichocarpa HOM05D002199 ORTHO05D004947 2.9e-17 91.3 58 70.7
QL03p020177 Quercus lobata HOM05D002199 ORTHO05D004947 5.0e-17 90.5 58 69.0
PGSC0003DMG400024713 Solanum tuberosum HOM05D001134 ORTHO05D001035 8.5e-17 89.7 56 71.4
CBR_g29529 Chara braunii HOM05D002199 ORTHO05D004947 1.1e-16 89.4 58 67.2
MELO3C024092.2 Cucumis melo HOM05D002199 ORTHO05D004947 1.1e-16 89.4 58 70.7
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.4e-16 89.0 59 71.2
SMO356G0382 Selaginella moellendorffii HOM05D002199 ORTHO05D004947 2.5e-16 88.2 61 68.9
Migut.D00124 Erythranthe guttata HOM05D002199 ORTHO05D004947 3.2e-16 87.8 58 69.0
CARHR196040 Cardamine hirsuta HOM05D002199 ORTHO05D004947 4.2e-16 87.4 58 70.7
Lj5g0015534 Lotus japonicus HOM05D002199 ORTHO05D004947 4.2e-16 87.4 58 67.2
Medtr1g088710 Medicago truncatula HOM05D002199 ORTHO05D004947 2.1e-15 85.1 56 67.9
MCO07G033 Micromonas commoda HOM05D002199 ORTHO05D004947 6.1e-15 83.6 58 62.1
Aa31LG11G9470 Aethionema arabicum HOM05D002199 ORTHO05D004947 1.3e-14 82.4 57 61.4
Lalb_Chr06g0163431 Lupinus albus HOM05D002199 ORTHO05D004947 1.1e-13 79.3 58 65.5
PRCOL_00007270 Prasinoderma coloniale HOM05D002199 ORTHO05D004947 3.7e-12 74.3 58 53.4
Cre06.g251300 Chlamydomonas reinhardtii HOM05D002199 ORTHO05D004947 1.8e-11 72.0 58 56.9
PGSC0003DMG400007541 Solanum tuberosum HOM05D002199 ORTHO05D004947 2.4e-11 71.6 52 63.5
Actinidia24830 Actinidia chinensis HOM05D002199 ORTHO05D004947 1.2e-10 69.3 39 74.4
Actinidia32227 Actinidia chinensis HOM05D002199 ORTHO05D004947 1.2e-10 69.3 39 74.4
Psat6g165920 Pisum sativum HOM05D002199 ORTHO05D004947 1.2e-10 69.3 39 74.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.0e-09 66.2 40 70.0
C05p43680 Brassica napus HOM05D002199 ORTHO05D004947 3.2e-08 61.2 51 56.9


User provided reference genes

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