Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 2599.7 1268 100.0
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 2428.3 1269 92.6
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 2384.4 1268 90.5
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 2384.0 1269 90.5
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2260.3 1269 85.4
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2248.4 1270 84.5
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 2245.7 1269 84.8
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 2228.8 1275 84.7
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 2219.9 1271 83.2
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 2144.0 1274 81.2
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2084.3 1272 78.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 2077.0 1272 78.4
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1942.9 1273 73.3
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1940.6 1274 73.9
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1928.3 1276 72.6
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1923.3 1276 72.6
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1921.7 1276 72.6
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1903.6 1277 72.0
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1893.2 1275 71.1
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1892.5 1274 71.7
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1887.5 1273 71.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1884.0 1274 70.3
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1882.8 1276 70.7
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1879.4 1274 71.4
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1876.7 1275 70.7
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1864.0 1280 70.2
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1862.0 1275 70.4
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1861.3 1279 70.5
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1860.9 1275 70.0
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1860.5 1276 70.1
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1860.1 1276 70.2
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1857.8 1276 70.1
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1857.8 1275 69.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1856.6 1275 69.9
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1851.6 1302 69.0
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1847.4 1277 69.9
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1836.6 1269 69.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1834.7 1277 69.4
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1819.3 1237 71.9
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1801.9 1285 68.1
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1796.6 1271 68.5
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1787.3 1269 68.1
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1772.3 1271 67.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1772.3 1271 66.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1758.4 1278 67.3
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1751.9 1275 66.7
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1749.6 1271 66.9
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1741.1 1272 66.2
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1736.5 1291 65.7
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1735.3 1275 65.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1728.4 1274 65.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1727.2 1245 66.7
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1720.3 1279 65.0
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1719.5 1281 64.9
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1718.0 1278 65.3
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1716.8 1353 61.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1708.0 1280 64.9
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1706.4 1275 65.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1705.3 1277 65.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1705.3 1369 60.4
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1701.4 1270 65.4
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1699.5 1280 64.9
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1696.0 1277 64.4
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1691.4 1273 64.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1679.5 1279 63.8
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1679.1 1276 63.3
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1676.4 1271 64.4
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1676.0 1281 64.2
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1674.4 1272 63.8
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1673.3 1279 64.4
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1672.9 1279 64.3
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1672.1 1277 64.3
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1666.7 1285 64.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1663.3 1283 64.1
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1663.3 1275 61.9
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1662.9 1275 61.9
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1660.2 1275 63.5
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1639.0 1367 59.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1634.0 1276 63.6
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1632.5 1272 61.2
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1626.7 1267 61.7
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1620.5 1191 67.2
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1614.4 1223 63.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1610.1 1181 66.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1569.3 1266 61.1
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1562.7 1274 60.8
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1554.7 1035 72.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1524.6 1041 70.0
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1494.6 1042 68.2
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1477.6 1276 56.2
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1440.2 1271 55.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1437.2 1273 58.3
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1435.6 1048 65.8
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1385.5 1268 55.0
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1352.0 1272 56.0
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1290.0 1231 52.6
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1264.2 1162 55.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1251.5 939 65.3
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1176.4 939 62.8
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1166.8 831 66.7
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1163.3 828 66.7
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1163.3 811 71.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1159.8 875 62.2
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1121.7 1194 49.2
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1118.6 830 63.6
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1110.5 939 60.3
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1107.4 1322 46.4
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1104.0 1299 46.5
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1082.8 1337 44.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 8.7e-312 1073.9 1324 45.7
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 1.7e-311 1073.2 760 67.5
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 7.8e-311 1070.8 777 65.1
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 2.4e-296 1022.7 760 66.6
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.1e-296 1021.9 690 70.3
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 5.4e-296 1021.5 1144 48.2
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.2e-226 791.2 1501 34.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.3e-225 787.7 545 67.9
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.6e-221 773.5 623 60.8
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.3e-213 746.5 500 71.4
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.6e-202 711.1 613 54.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 6.0e-186 656.0 470 70.2
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 3.3e-184 650.2 496 59.9
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.0e-132 479.2 395 61.8
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 3.0e-129 467.6 368 65.5
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 9.7e-128 462.6 320 70.9
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 2.2e-124 451.4 338 64.2
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.6e-98 364.4 1374 26.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.9e-84 318.2 1236 25.6
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 5.5e-83 313.9 259 58.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.2e-47 195.7 269 41.6
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 6.0e-45 187.6 156 60.9
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.9e-39 168.7 147 54.4
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.7e-31 142.9 101 71.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-22 113.6 78 65.4
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.1e-14 87.0 68 57.4
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 4.2e-14 85.1 46 87.0
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 3.0e-12 79.0 53 71.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 6.7e-12 77.8 53 69.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 3.7e-10 72.0 99 41.4
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 4.8e-10 71.6 56 60.7
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.4e-09 70.1 62 59.7
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.8e-09 69.7 48 68.8
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.8e-09 69.7 50 64.0
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 3.1e-09 68.9 48 68.8
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 6.9e-09 67.8 48 66.7
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.2e-08 67.0 48 66.7
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.2e-08 67.0 48 66.7
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.2e-08 67.0 135 31.1
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.2e-08 67.0 94 35.1
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.6e-08 65.9 131 35.1
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.9e-08 64.7 181 29.8
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.0e-07 63.9 80 45.0
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.3e-07 63.5 196 29.1
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 1.4e-06 60.1 67 40.3
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 1.9e-06 59.7 174 27.6
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.9e-06 59.7 117 30.8
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 3.2e-06 58.9 236 28.0
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 5.5e-06 58.2 50 54.0


User provided reference genes

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