Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 9.1e-281 969.9 617 100.0
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 4.5e-195 685.3 609 76.4
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 2.4e-188 662.9 613 72.1
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 9.8e-142 508.1 613 50.9
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.8e-140 503.8 613 50.7
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 8.0e-136 488.4 619 58.5
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 6.3e-133 478.8 613 48.6
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 5.0e-122 442.6 612 50.7
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.9e-121 440.7 617 48.9
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 6.4e-117 425.6 628 50.6
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 3.5e-99 366.7 625 40.5
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 6.0e-75 286.2 630 39.4
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 1.9e-68 264.6 707 32.7
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 5.5e-68 263.1 628 38.4
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 6.7e-66 256.1 378 44.4
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 2.6e-62 244.2 251 59.4
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 3.0e-58 230.7 616 31.8
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.1e-57 228.8 607 32.1
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 2.5e-57 227.6 541 33.1
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 1.3e-56 225.3 620 35.3
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 8.2e-56 222.6 691 29.4
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 6.9e-55 219.5 631 29.3
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 2.6e-54 217.6 640 32.0
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 5.9e-54 216.5 620 29.8
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 7.7e-54 216.1 657 29.7
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 2.2e-53 214.5 622 29.6
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 5.5e-52 209.9 563 40.1
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 1.5e-49 201.8 730 28.2
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.4e-47 194.5 370 37.3
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 3.4e-46 190.7 369 36.3
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 7.7e-46 189.5 724 27.5
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 1.7e-45 188.3 365 35.1
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 2.9e-45 187.6 349 43.8
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 4.2e-44 183.7 366 37.4
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 9.4e-44 182.6 390 35.4
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 3.6e-43 180.6 365 34.2
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 4.7e-43 180.3 296 42.9
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 7.9e-43 179.5 614 28.0
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 2.3e-42 177.9 424 35.8
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 3.0e-42 177.6 417 34.8
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 3.0e-42 177.6 388 35.8
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 8.8e-42 176.0 626 30.4
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.5e-41 175.3 649 29.1
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 4.4e-41 173.7 622 28.1
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 4.4e-41 173.7 338 37.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 9.7e-41 172.6 370 35.9
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 9.7e-41 172.6 629 28.5
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 2.2e-40 171.4 356 36.0
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 2.8e-40 171.0 347 36.6
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 2.8e-40 171.0 364 36.0
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.8e-40 171.0 622 29.1
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.7e-40 170.6 638 27.1
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 4.8e-40 170.2 641 27.1
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 6.3e-40 169.9 628 29.0
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 8.2e-40 169.5 652 29.4
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 1.8e-39 168.3 370 35.1
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 2.4e-39 167.9 364 33.2
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 3.1e-39 167.5 652 26.7
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 3.1e-39 167.5 370 34.9
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 4.1e-39 167.2 370 34.9
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 5.3e-39 166.8 157 48.4
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 5.3e-39 166.8 356 36.8
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 9.1e-39 166.0 363 36.4
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.2e-38 165.6 640 27.0
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 1.6e-38 165.2 385 33.5
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.6e-38 165.2 349 35.2
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.0e-38 164.9 150 50.0
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 3.5e-38 164.1 378 33.3
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 5.9e-38 163.3 628 26.3
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 7.7e-38 162.9 403 34.0
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.0e-37 162.5 641 27.0
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.0e-37 162.5 380 35.3
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.3e-37 162.2 371 35.8
TPR.G24034 Trifolium pratense HOM05D006136 ORTHO05D007244 1.3e-37 162.2 91 91.2
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 2.2e-37 161.4 654 26.6
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 2.2e-37 161.4 375 32.8
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 2.9e-37 161.0 365 39.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 2.9e-37 161.0 642 32.7
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.9e-37 161.0 351 34.2
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 8.5e-37 159.5 370 34.6
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 8.5e-37 159.5 338 34.9
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.1e-36 159.1 635 29.0
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.1e-36 159.1 649 33.4
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.5e-36 158.7 633 27.2
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.5e-36 158.7 691 26.8
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 1.9e-36 158.3 616 29.2
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 4.2e-36 157.1 370 32.4
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 9.4e-36 156.0 351 32.2
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.2e-35 155.6 659 25.6
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.6e-35 155.2 350 32.3
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 2.7e-35 154.5 434 28.1
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.6e-35 154.1 539 30.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.4e-34 152.1 361 33.0
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 2.3e-34 151.4 686 25.7
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 3.0e-34 151.0 636 27.2
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 5.7e-33 146.7 384 29.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 7.5e-33 146.4 416 28.8
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.3e-32 145.6 650 26.5
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.8e-31 141.7 658 24.3
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.4e-31 141.4 175 42.9
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 5.9e-30 136.7 671 25.6
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 2.9e-29 134.4 75 80.0
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 1.7e-24 118.6 172 43.6
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.1e-23 115.9 164 43.9
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 1.0e-18 99.4 51 94.1
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 2.4e-15 88.2 359 24.5
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 4.5e-14 84.0 137 34.3
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 2.3e-13 81.6 104 41.3
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 1.1e-12 79.3 150 40.0
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 5.6e-12 77.0 82 51.2
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 2.1e-11 75.1 44 77.3
Psat1g163240 Pisum sativum HOM05D007111 ORTHO05D008698 2.1e-11 75.1 44 77.3
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.5e-09 68.9 33 97.0
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 3.4e-09 67.8 48 62.5
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 1.3e-08 65.9 158 32.3
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 2.9e-08 64.7 34 76.5
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 4.9e-08 63.9 49 63.3
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 2.7e-06 58.2 504 24.4
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 4.6e-06 57.4 48 54.2


User provided reference genes

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