Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 3.2e-91 338.6 192 100.0
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.1e-70 268.9 199 82.9
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 7.6e-69 264.2 198 81.3
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.0e-68 263.8 199 80.4
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 8.4e-68 260.8 197 80.2
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.4e-67 260.0 199 78.9
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.6e-66 256.5 198 77.8
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 2.7e-66 255.8 198 78.3
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 3.5e-66 255.4 197 79.7
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 3.5e-66 255.4 197 79.7
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 3.5e-66 255.4 200 78.5
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 5.1e-65 251.5 192 79.2
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 9.7e-64 247.3 190 79.5
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.6e-63 246.5 198 76.3
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 2.2e-63 246.1 199 76.4
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 2.2e-63 246.1 200 76.0
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 4.8e-63 245.0 198 69.2
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 6.3e-63 244.6 198 76.8
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 6.3e-63 244.6 197 74.6
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.1e-62 243.8 198 76.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.1e-62 243.8 198 76.8
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.1e-62 243.8 200 74.5
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 2.4e-62 242.7 199 75.9
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 2.4e-62 242.7 198 76.3
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 3.1e-62 242.3 202 73.3
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 5.3e-62 241.5 199 74.4
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 6.9e-62 241.1 201 74.1
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 9.0e-62 240.7 200 75.5
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 9.0e-62 240.7 196 76.5
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.2e-61 240.4 199 74.9
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.2e-61 240.4 198 75.3
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.5e-61 240.0 199 74.9
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 2.6e-61 239.2 200 73.5
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 4.5e-61 238.4 200 75.0
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 5.9e-61 238.0 199 74.4
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.0e-60 237.3 200 74.0
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.0e-60 237.3 201 73.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.3e-60 236.9 198 74.7
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.2e-60 236.1 201 74.1
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.2e-60 236.1 200 73.5
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 3.8e-60 235.3 201 71.6
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 5.0e-60 235.0 200 72.5
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 5.0e-60 235.0 202 73.3
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.9e-59 233.0 200 72.5
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 2.5e-59 232.6 199 73.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 2.5e-59 232.6 200 73.5
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 2.5e-59 232.6 198 73.7
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 2.5e-59 232.6 198 73.7
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.5e-59 232.6 200 73.5
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 4.2e-59 231.9 199 73.9
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 5.5e-59 231.5 195 74.9
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 5.5e-59 231.5 198 73.2
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 7.2e-59 231.1 194 75.8
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 7.2e-59 231.1 199 72.9
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 7.2e-59 231.1 199 73.9
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 7.2e-59 231.1 199 73.9
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 7.2e-59 231.1 199 72.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 9.4e-59 230.7 198 73.7
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.1e-58 229.6 199 73.4
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.1e-58 229.6 198 72.7
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 2.1e-58 229.6 199 74.4
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.7e-58 229.2 199 73.4
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 3.6e-58 228.8 195 73.3
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 4.6e-58 228.4 199 72.9
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 6.1e-58 228.0 200 73.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 7.9e-58 227.6 202 72.3
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 7.9e-58 227.6 204 70.6
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.0e-57 227.3 200 72.5
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.4e-57 226.9 202 71.8
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.8e-57 226.5 200 72.5
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.8e-57 226.5 199 71.9
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 2.3e-57 226.1 198 74.2
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 2.3e-57 226.1 199 70.4
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.3e-57 226.1 204 70.6
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 3.0e-57 225.7 200 72.0
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 3.0e-57 225.7 195 74.4
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 3.9e-57 225.3 201 71.1
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 3.9e-57 225.3 194 73.2
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 8.8e-57 224.2 201 71.6
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 8.8e-57 224.2 201 71.6
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.5e-56 222.6 202 70.8
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 2.5e-56 222.6 201 71.1
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.5e-56 222.6 204 71.1
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.3e-56 222.2 204 71.1
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 4.3e-56 221.9 199 71.4
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 5.7e-56 221.5 198 71.2
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.4e-56 221.1 204 70.6
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 7.4e-56 221.1 200 70.5
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 7.4e-56 221.1 199 71.4
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.7e-55 219.9 199 71.4
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 3.7e-55 218.8 199 70.9
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 6.3e-55 218.0 208 61.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.3e-55 218.0 199 70.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 6.3e-55 218.0 204 69.1
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.3e-55 218.0 200 68.5
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.4e-54 216.9 199 68.3
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 3.1e-54 215.7 240 61.2
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 4.5e-53 211.8 197 70.6
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.0e-52 208.4 198 68.7
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-51 206.8 155 80.0
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.9e-51 206.5 149 75.2
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 7.2e-51 204.5 152 72.4
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.6e-50 203.4 203 67.5
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 6.1e-50 201.4 273 54.2
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.4e-49 200.3 172 73.8
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 6.7e-49 198.0 194 67.5
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 6.3e-47 191.4 147 68.7
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.2e-45 187.2 196 64.3
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.2e-45 187.2 191 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.7e-45 184.5 143 67.8
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.3e-44 183.7 295 48.8
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.9e-43 179.9 130 72.3
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.1e-42 176.4 201 59.7
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 5.2e-41 171.8 114 77.2
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 8.8e-41 171.0 196 57.1
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 1.1e-40 170.6 207 52.2
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-40 170.2 192 63.5
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.3e-40 169.1 175 61.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.9e-36 156.0 222 55.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-35 154.1 139 66.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 4.2e-35 152.1 122 77.9
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-32 143.7 206 55.3
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 5.7e-32 141.7 140 56.4
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.7e-31 140.2 217 45.2
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.6e-29 133.7 116 67.2
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 5.0e-28 128.6 195 46.7
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 5.0e-28 128.6 226 45.6
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 8.8e-25 117.9 282 44.0
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.7e-20 103.6 138 47.1
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 7.2e-19 98.2 213 42.7
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 9.8e-16 87.8 95 69.5
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 7.0e-14 81.6 90 68.9
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 5.0e-12 75.5 205 36.6
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.2e-08 64.3 45 68.9


User provided reference genes

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