Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.1e-243 845.5 505 100.0
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 6.4e-208 727.6 511 84.9
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 6.9e-162 574.7 441 73.5
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 9.1e-162 574.3 451 71.0
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 5.9e-161 571.6 445 70.8
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.9e-159 566.6 410 76.1
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 9.4e-159 564.3 447 71.1
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 1.2e-158 563.9 444 70.3
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 4.7e-158 562.0 446 70.6
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 3.9e-157 558.9 437 70.5
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 8.8e-157 557.8 440 69.3
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 3.7e-155 552.4 442 68.6
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 4.8e-155 552.0 502 59.6
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 8.2e-155 551.2 435 70.6
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.8e-154 550.1 437 68.6
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 5.3e-154 548.5 440 68.4
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.6e-153 547.0 436 70.2
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 1.6e-153 547.0 442 68.3
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.0e-153 546.6 446 63.0
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 5.9e-153 545.0 443 69.5
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 2.2e-152 543.1 432 70.8
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 2.2e-152 543.1 439 68.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 2.9e-152 542.7 449 67.0
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 3.8e-152 542.3 449 66.8
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 3.8e-152 542.3 447 67.3
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 6.5e-152 541.6 520 61.0
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 8.5e-152 541.2 532 66.5
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 8.5e-152 541.2 436 69.0
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 1.1e-151 540.8 440 68.9
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.5e-151 540.4 447 67.3
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 2.5e-151 539.7 445 67.2
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 3.2e-151 539.3 513 62.2
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 5.5e-151 538.5 444 68.5
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 9.4e-151 537.7 442 68.3
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 1.2e-150 537.3 446 67.3
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.1e-150 536.6 442 67.9
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 6.1e-150 535.0 434 67.5
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 5.2e-149 531.9 403 71.5
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 5.2e-149 531.9 540 55.9
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 4.4e-148 528.9 441 66.9
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 4.4e-148 528.9 435 62.8
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 4.4e-148 528.9 434 68.7
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 5.7e-148 528.5 434 67.1
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 9.7e-148 527.7 439 68.3
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 1.3e-147 527.3 440 68.0
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 3.7e-147 525.8 445 65.6
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 8.2e-147 524.6 514 60.3
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 8.2e-147 524.6 469 64.0
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 8.2e-147 524.6 434 67.5
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 8.2e-147 524.6 443 65.7
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 2.4e-146 523.1 450 65.3
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 3.1e-146 522.7 509 60.3
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 7.0e-146 521.5 433 67.2
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 7.0e-146 521.5 508 67.7
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.6e-145 520.4 503 61.6
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 2.0e-145 520.0 430 66.3
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 5.9e-145 518.5 440 66.6
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 5.9e-145 518.5 405 70.4
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.7e-144 516.9 435 66.0
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.7e-144 516.9 447 61.3
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 2.9e-144 516.2 435 65.7
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 3.8e-144 515.8 443 65.9
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 3.8e-144 515.8 436 65.8
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.9e-143 513.5 482 62.4
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 2.5e-143 513.1 505 56.6
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 9.4e-143 511.1 499 61.3
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 1.6e-142 510.4 435 66.4
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 1.4e-141 507.3 500 61.0
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 2.3e-141 506.5 445 64.5
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 2.3e-141 506.5 508 59.8
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 4.0e-141 505.8 499 60.9
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 6.8e-141 505.0 438 65.5
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 1.5e-140 503.8 516 57.9
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 4.4e-140 502.3 434 65.4
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 5.7e-140 501.9 516 57.6
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 5.7e-140 501.9 436 64.7
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 7.5e-140 501.5 436 64.4
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.3e-139 500.7 376 72.6
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 1.7e-139 500.4 421 66.0
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 1.7e-139 500.4 433 64.0
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 2.8e-139 499.6 395 70.6
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 6.3e-139 498.4 433 66.1
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 8.3e-139 498.0 480 60.8
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 8.3e-139 498.0 448 62.9
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.1e-138 497.7 443 64.6
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 1.4e-138 497.3 516 57.8
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 1.8e-138 496.9 447 63.8
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 5.4e-138 495.4 443 63.2
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 1.2e-137 494.2 399 67.7
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 2.0e-137 493.4 433 66.5
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 7.7e-137 491.5 431 64.5
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 7.7e-137 491.5 377 71.6
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 1.7e-136 490.3 451 61.9
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 5.0e-136 488.8 375 71.7
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 6.5e-136 488.4 377 71.6
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 1.5e-135 487.3 440 62.7
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 2.7e-134 483.0 447 61.5
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 4.7e-134 482.3 434 65.0
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 8.0e-134 481.5 435 65.1
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.2e-129 467.6 438 56.8
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 2.9e-128 463.0 409 61.1
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.6e-126 457.2 429 61.5
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 8.0e-126 454.9 369 68.8
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 1.5e-124 450.7 436 58.5
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.6e-124 449.9 498 53.0
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 6.6e-120 435.3 465 53.5
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 1.5e-119 434.1 432 57.9
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 9.5e-119 431.4 396 61.9
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 3.6e-118 429.5 443 58.9
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.3e-115 421.0 417 56.8
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 2.8e-110 403.3 449 53.9
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 9.2e-106 388.3 420 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 4.6e-105 386.0 452 53.8
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 4.3e-103 379.4 456 51.8
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 6.8e-101 372.1 460 50.9
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 9.3e-90 335.1 353 58.6
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 1.5e-84 317.8 261 60.5
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 2.2e-83 313.9 401 49.9
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 4.5e-76 289.7 523 40.7
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 2.6e-68 263.8 474 35.7
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.2e-66 256.5 185 69.2
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 5.7e-63 246.1 282 50.7
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 4.2e-58 229.9 268 49.3
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 5.7e-55 219.5 469 36.9
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 5.5e-50 203.0 251 47.8
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 8.2e-46 189.1 223 45.3
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.4e-42 178.3 458 29.7
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 6.3e-30 136.3 517 26.9
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 2.7e-25 120.9 141 45.4
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 3.1e-21 107.5 110 52.7
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 3.5e-20 104.0 93 53.8
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 7.7e-20 102.8 93 52.7
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 1.6e-17 95.1 161 38.5
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 2.1e-17 94.7 155 38.7
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 8.3e-14 82.8 141 35.5
BcaB06g25383 Brassica carinata HOM05D005639 ORTHO05D093847 6.4e-06 56.6 94 33.0


User provided reference genes

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