Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 0.0e+00 1239.2 631 100.0
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.1e-293 1011.9 613 84.5
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.8e-250 868.2 631 71.6
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.4e-249 863.6 631 71.9
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 1.5e-246 856.3 632 71.7
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 4.4e-238 828.2 635 68.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.1e-236 823.5 628 68.8
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 4.7e-232 808.1 627 66.8
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 1.5e-230 803.1 639 67.8
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 7.4e-230 800.8 627 66.3
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.3e-226 790.0 626 66.1
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 2.9e-226 788.9 654 65.3
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.8e-226 788.5 626 66.1
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 6.5e-226 787.7 626 66.5
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 8.5e-226 787.3 636 66.7
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 8.5e-226 787.3 635 67.1
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 1.5e-225 786.6 632 67.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.5e-225 786.6 632 65.2
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.6e-224 781.9 630 65.7
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 6.1e-224 781.2 631 66.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.8e-223 779.6 630 65.7
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.8e-223 779.6 634 65.8
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.8e-223 779.6 635 65.7
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.4e-220 769.2 634 64.4
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 5.3e-220 768.1 633 64.0
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.2e-219 766.9 630 63.7
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.2e-219 766.9 622 66.1
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 5.9e-219 764.6 636 64.0
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.3e-218 763.5 613 66.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 5.0e-218 761.5 631 64.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 3.0e-215 752.3 631 65.1
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 9.8e-214 747.3 639 63.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.8e-213 745.0 633 62.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.2e-211 740.3 638 63.6
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.2e-211 740.3 638 62.9
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.2e-211 740.3 633 64.3
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.2e-211 740.3 597 63.7
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 5.0e-210 734.9 628 61.9
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.9e-209 733.0 598 62.9
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.5e-209 731.5 633 63.0
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.6e-208 729.9 642 61.7
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.6e-208 728.8 633 62.9
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 4.7e-208 728.4 645 60.2
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 6.1e-208 728.0 638 62.9
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 8.0e-208 727.6 645 62.5
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-206 723.8 633 62.2
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.2e-206 723.8 633 60.5
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 2.6e-206 722.6 633 62.4
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 7.5e-206 721.1 597 62.3
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.8e-206 720.7 637 62.6
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 9.8e-206 720.7 599 61.9
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-205 719.5 638 62.1
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 2.8e-205 719.2 633 62.1
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 8.3e-205 717.6 626 60.5
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.4e-204 716.8 629 59.9
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.4e-204 716.1 632 59.2
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 4.1e-204 715.3 638 60.2
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.4e-204 714.9 625 60.3
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.6e-203 713.4 636 58.8
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 7.8e-203 711.1 630 60.0
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 8.6e-202 707.6 625 61.6
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 8.6e-202 707.6 599 60.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.1e-201 707.2 632 59.2
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 4.3e-201 705.3 599 60.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.2e-200 703.7 630 59.7
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.8e-200 702.6 641 58.7
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 4.7e-200 701.8 633 58.9
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.3e-199 699.5 599 60.4
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 3.1e-199 699.1 626 59.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.0e-198 696.4 626 59.7
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.8e-198 694.9 642 57.9
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 7.5e-198 694.5 629 59.5
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 8.3e-197 691.0 643 58.3
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 8.3e-197 691.0 632 61.7
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.4e-196 690.3 640 59.5
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.2e-195 687.2 631 60.2
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.3e-194 682.9 629 59.9
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 8.6e-194 681.0 643 59.1
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 7.3e-193 677.9 639 57.0
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.2e-192 677.2 644 57.1
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 2.1e-192 676.4 635 57.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.5e-190 670.2 625 57.4
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 4.1e-188 662.1 639 56.2
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 3.5e-187 659.1 640 56.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.0e-186 657.5 639 57.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 3.0e-186 656.0 638 56.0
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 2.5e-185 652.9 629 57.9
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 3.6e-184 649.0 604 57.6
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.8e-183 644.8 564 61.7
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 2.0e-182 643.3 633 57.3
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 9.2e-180 634.4 636 54.9
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 9.2e-180 634.4 636 54.9
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 3.0e-178 629.4 631 55.0
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.5e-177 626.3 637 55.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 5.8e-174 615.1 636 53.5
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 6.4e-173 611.7 637 53.5
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.9e-172 610.1 637 53.4
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.9e-172 610.1 637 53.4
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 6.0e-171 605.1 627 53.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.3e-170 603.2 627 53.0
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 3.3e-169 599.4 639 53.5
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 9.6e-169 597.8 530 61.5
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.2e-168 597.4 639 53.4
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.4e-167 594.0 548 59.7
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 9.9e-166 587.8 546 57.5
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 2.4e-159 566.6 635 49.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 3.2e-156 556.2 613 51.7
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 5.4e-156 555.4 659 48.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 7.1e-156 555.1 634 49.8
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.5e-153 547.4 635 53.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.6e-153 545.4 535 55.7
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.3e-149 534.3 631 48.3
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 9.3e-148 528.1 646 48.5
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 3.0e-146 523.1 651 48.4
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 3.2e-140 503.1 480 57.9
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 7.1e-140 501.9 635 46.5
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.2e-134 484.6 638 45.1
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.8e-125 453.0 530 49.1
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-119 434.9 403 60.5
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 4.5e-118 429.5 338 67.8
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 8.2e-112 408.7 653 41.0
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.4e-111 407.1 541 46.6
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 7.2e-108 395.6 454 51.3
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 4.0e-106 389.8 546 46.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.0e-103 379.0 459 48.8
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 8.0e-99 365.5 663 36.0
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.0e-93 348.6 439 46.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-93 348.6 390 52.8
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.3e-93 347.4 390 52.6
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 1.8e-90 337.8 251 70.9
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 8.6e-85 318.9 631 36.0
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.2e-81 308.5 279 56.6
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.9e-72 277.3 577 34.8
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 4.9e-72 276.6 244 59.4
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.2e-62 245.4 784 29.1
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 3.5e-62 243.8 203 61.1
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-59 235.0 382 40.3
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.6e-59 233.8 382 40.1
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.8e-58 231.5 382 40.1
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 8.9e-58 229.2 146 69.9
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 8.7e-45 186.0 418 35.4
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 8.1e-43 179.5 162 59.3
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.5e-41 175.3 628 26.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.0e-37 162.5 175 50.3
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 5.1e-37 160.2 594 26.6
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 4.3e-36 157.1 565 27.6
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-27 128.6 272 37.1
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 5.7e-20 103.6 60 75.0
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 5.3e-18 97.1 82 57.3
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 7.7e-17 93.2 86 54.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 5.1e-13 80.5 233 31.8
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.0e-12 78.6 79 59.5
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 6.5e-08 63.5 63 55.6
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 7.2e-07 60.1 62 51.6


User provided reference genes

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