Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.2e-89 332.0 206 100.0
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 5.8e-83 311.2 205 91.2
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 7.9e-80 300.8 204 88.7
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 7.9e-80 300.8 204 89.2
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 6.3e-77 291.2 204 88.7
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 8.2e-77 290.8 201 86.6
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.4e-76 289.3 204 84.8
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 6.9e-76 287.7 205 87.8
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 9.0e-76 287.3 204 83.8
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.2e-75 287.0 201 87.6
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 2.0e-75 286.2 201 85.6
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 5.9e-75 284.6 197 86.3
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 84.3
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 7.6e-75 284.3 204 84.3
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.3e-74 283.5 204 83.3
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.3e-74 283.5 202 87.1
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.7e-74 283.1 204 83.8
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 3.8e-74 282.0 204 83.3
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 5.0e-74 281.6 204 83.3
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 5.0e-74 281.6 201 87.1
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.4e-73 280.0 205 84.9
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.4e-73 280.0 204 87.3
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 4.2e-73 278.5 204 84.8
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 4.2e-73 278.5 201 87.1
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 4.2e-73 278.5 201 87.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.5e-73 278.1 205 85.4
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 5.5e-73 278.1 204 82.4
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 7.2e-73 277.7 204 84.3
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.2e-72 276.9 204 85.3
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-72 276.9 204 83.8
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.6e-72 276.6 204 85.3
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.6e-72 276.6 201 86.6
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.7e-72 275.8 201 85.1
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 7.9e-72 274.2 206 82.5
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.3e-71 273.5 201 83.6
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 2.3e-71 272.7 206 86.4
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 83.8
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 3.0e-71 272.3 201 85.1
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.0e-71 272.3 200 88.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 5.1e-71 271.6 201 82.6
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 5.1e-71 271.6 201 81.6
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 6.7e-71 271.2 201 86.1
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.1e-70 270.4 204 80.9
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.9e-70 269.6 204 83.3
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 2.5e-70 269.2 204 83.3
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 2.5e-70 269.2 204 83.3
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 2.5e-70 269.2 201 84.6
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 4.3e-70 268.5 205 81.5
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 4.3e-70 268.5 205 81.5
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 4.3e-70 268.5 204 84.8
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 4.3e-70 268.5 204 83.8
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.3e-70 268.5 200 88.5
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 5.7e-70 268.1 204 80.9
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 7.4e-70 267.7 204 80.9
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 7.4e-70 267.7 204 80.9
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 9.7e-70 267.3 204 81.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.3e-69 266.9 204 82.4
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.3e-69 266.9 205 83.4
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.3e-69 266.9 196 87.8
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.6e-69 266.5 205 82.9
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.6e-69 266.5 204 80.4
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 2.8e-69 265.8 204 82.8
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 2.8e-69 265.8 247 70.0
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 6.3e-69 264.6 200 87.0
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 6.3e-69 264.6 199 83.4
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 6.3e-69 264.6 204 81.4
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 6.3e-69 264.6 205 80.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 8.2e-69 264.2 199 78.4
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.1e-68 263.8 204 83.3
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.4e-68 263.5 204 75.5
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.4e-68 263.5 201 81.6
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.8e-68 263.1 205 75.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.4e-68 262.7 195 88.2
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.4e-68 262.7 196 84.2
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 199 87.4
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 3.1e-68 262.3 199 87.4
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.1e-68 261.9 204 81.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 6.9e-68 261.2 201 81.1
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 9.1e-68 260.8 201 81.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 5.9e-67 258.1 201 77.6
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 5.9e-67 258.1 202 85.1
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 7.7e-67 257.7 201 79.6
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 1.0e-66 257.3 199 76.4
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.3e-66 256.9 201 80.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.3e-66 256.9 205 84.4
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 2.2e-66 256.1 201 76.1
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.2e-66 256.1 213 77.5
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.9e-66 255.8 213 77.5
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 6.5e-66 254.6 202 80.2
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.5e-66 254.6 213 77.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.1e-65 253.8 201 79.6
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.4e-65 253.4 202 79.2
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 4.2e-65 251.9 199 79.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 2.1e-64 249.6 207 76.8
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 2.7e-64 249.2 201 77.6
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 3.6e-64 248.8 163 92.0
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 3.9e-63 245.4 153 84.3
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 3.9e-63 245.4 195 84.6
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.7e-63 244.6 201 77.6
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.1e-62 243.8 204 76.0
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 3.3e-62 242.3 196 75.0
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 9.1e-60 234.2 211 63.5
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.2e-59 233.8 160 89.4
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 7.7e-59 231.1 197 77.7
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.3e-58 230.3 155 78.7
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 6.5e-58 228.0 275 56.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.4e-57 226.9 199 71.4
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.5e-54 216.9 297 57.2
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.3e-53 213.8 149 70.5
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.8e-53 211.8 197 73.6
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.6e-51 206.8 146 69.2
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 5.9e-51 204.9 204 67.6
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.2e-50 203.0 142 71.8
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.5e-50 201.4 210 57.1
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.2e-49 199.1 204 63.2
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 1.6e-48 196.8 205 61.0
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 2.3e-47 193.0 110 85.5
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 8.8e-47 191.0 228 66.2
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.8e-44 183.3 159 75.5
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.1e-41 174.1 149 67.1
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.3e-39 166.4 144 61.8
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.8e-38 161.0 213 62.4
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 9.8e-38 161.0 122 86.1
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.1e-36 156.0 127 67.7
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 3.5e-35 152.5 225 48.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.7e-34 150.2 285 50.5
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 5.0e-34 148.7 199 48.7
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.4e-31 140.6 230 52.6
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.0e-23 112.8 148 45.3
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 2.9e-21 106.3 215 42.3
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 5.0e-18 95.5 95 77.9
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 2.5e-17 93.2 90 80.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.1e-15 87.8 215 36.7
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 9.2e-12 74.7 46 82.6
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 8.1e-08 61.6 159 27.7


User provided reference genes

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