Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1320.1 674 100.0
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1191.4 673 89.6
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1185.6 674 88.6
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1185.2 674 88.6
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1180.2 667 88.8
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1178.3 673 87.7
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1167.5 675 86.5
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1167.1 675 87.0
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1162.9 673 86.8
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1162.5 671 86.4
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1160.2 674 86.1
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1159.1 672 86.0
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1159.1 667 86.8
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1158.3 671 86.0
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1157.5 674 85.8
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1157.1 671 85.8
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1155.6 667 86.5
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1153.3 665 86.6
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1152.9 665 86.6
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1152.5 665 86.5
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1151.0 675 86.4
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1150.6 671 85.8
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1147.9 674 85.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1145.6 673 85.3
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1145.2 675 84.6
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1144.4 674 84.4
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1143.3 669 86.2
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 671 85.5
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1136.3 671 85.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1136.3 673 85.1
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1134.8 671 84.1
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1131.7 675 84.0
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 669 84.8
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 664 83.7
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1129.8 670 83.7
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1128.2 677 84.3
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1127.5 674 83.8
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1125.9 674 83.8
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1121.3 682 83.3
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1120.9 698 81.1
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1120.1 675 83.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1120.1 662 84.6
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1119.4 664 84.2
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1119.4 671 83.9
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 647 85.9
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 647 85.9
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1117.8 673 84.0
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1117.4 709 80.8
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1117.1 664 84.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1115.9 674 82.6
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 674 82.6
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 676 82.7
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1106.3 691 81.5
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1104.7 663 83.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 644 85.6
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1099.7 665 81.5
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1099.0 665 81.4
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1097.8 659 82.7
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 675 81.5
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1094.0 663 82.5
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 688 81.0
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 662 82.2
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 669 81.0
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 679 80.3
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1088.6 697 81.1
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 758 76.0
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 665 81.2
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1086.2 659 81.9
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 673 81.3
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 0.0e+00 1083.9 671 80.6
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 672 81.1
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1078.9 665 80.6
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 0.0e+00 1077.8 687 78.9
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1076.6 684 81.7
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 4.1e-311 1070.8 724 77.2
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 5.5e-311 1070.5 696 77.3
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.9e-308 1062.0 646 80.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 8.0e-307 1056.6 641 82.4
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 6.0e-302 1040.4 675 79.9
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 6.6e-301 1036.9 694 77.5
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.6e-294 1014.2 642 79.4
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.5e-289 999.2 674 77.0
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 5.2e-282 974.2 582 82.6
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.7e-277 959.1 597 80.7
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 3.9e-277 958.0 659 73.7
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 2.5e-276 955.3 674 73.7
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.1e-275 952.2 654 76.6
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 3.1e-274 948.3 626 74.8
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.7e-272 942.6 590 79.5
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 4.3e-268 927.9 675 73.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.8e-267 925.2 666 70.3
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.3e-266 921.0 509 89.8
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 2.2e-264 915.6 655 71.0
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.1e-258 896.7 636 73.6
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 4.5e-257 891.3 672 67.0
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.4e-250 869.0 700 66.6
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.1e-246 855.9 700 65.7
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 8.2e-235 817.4 445 89.9
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.8e-219 765.0 462 79.2
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.1e-198 696.4 669 54.1
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 8.6e-184 647.9 382 83.0
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.3e-181 639.8 367 87.2
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 5.8e-180 635.2 374 85.6
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-179 632.9 535 62.8
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.6e-174 617.1 366 84.7
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 8.9e-173 611.3 672 50.3
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.0e-172 610.1 387 80.9
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 1.0e-168 597.8 638 51.4
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 5.6e-151 538.9 306 88.2
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.4e-146 524.2 367 74.4
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 7.6e-140 501.9 308 80.2
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.4e-139 498.4 630 49.0
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.3e-138 495.0 307 80.1
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.4e-120 438.0 298 76.8
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.8e-109 401.0 467 51.2
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 3.4e-87 327.0 216 79.2
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.8e-81 307.4 217 71.4
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.7e-70 270.4 176 78.4
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 6.0e-60 236.5 243 57.2
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 7.6e-55 219.5 246 52.4
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 2.2e-54 218.0 217 58.5
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 2.3e-51 208.0 104 91.3
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 3.6e-49 200.7 221 49.8
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-38 165.6 401 33.2
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.3e-35 155.6 87 87.4
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.8e-35 155.2 87 87.4
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.0e-35 154.5 466 33.5
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 6.7e-35 153.3 150 56.0
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.5e-34 152.1 87 86.2
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 3.3e-34 151.0 86 88.4
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 5.3e-32 143.7 107 67.3
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.1e-26 125.9 86 73.3
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.8e-24 118.6 113 55.8
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 1.6e-20 105.5 68 80.9
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 3.5e-20 104.4 68 79.4
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 3.5e-20 104.4 82 70.7
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 6.1e-20 103.6 54 92.6
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 6.7e-19 100.1 97 60.8
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.1e-18 99.4 82 67.1
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 4.3e-18 97.4 55 85.5
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.2e-15 89.4 49 91.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 5.9e-15 87.0 49 87.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 2.2e-14 85.1 87 57.5
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.2e-14 85.1 63 74.6
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.5e-13 81.6 201 33.8
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.6e-12 79.0 68 54.4
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.0e-10 72.0 67 58.2
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.3e-10 70.9 98 46.9
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.1e-08 66.2 50 64.0
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.6e-07 61.6 46 73.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.0e-06 59.7 44 63.6
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.3e-06 59.3 40 70.0
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 2.9e-06 58.2 33 90.9
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 3.8e-06 57.8 33 81.8
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 3.8e-06 57.8 36 75.0
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 5.0e-06 57.4 39 79.5


User provided reference genes

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