Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.7e-228 794.3 428 100.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.3e-165 585.5 430 78.6
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.9e-144 516.5 432 69.9
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 2.3e-129 466.5 445 64.5
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.4e-123 446.4 465 59.1
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 5.0e-121 438.7 433 61.9
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 5.0e-121 438.7 433 61.9
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.1e-118 431.0 444 60.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.0e-117 426.8 432 61.6
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.9e-116 422.9 433 59.1
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.1e-115 421.0 426 60.6
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 7.0e-115 418.3 477 57.7
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 5.1e-113 412.1 445 58.7
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 1.1e-112 411.0 440 58.4
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.5e-112 410.6 472 57.8
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 4.3e-112 409.1 428 59.3
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 7.3e-112 408.3 468 58.3
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 7.3e-112 408.3 443 57.8
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.5e-109 400.6 445 57.5
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 5.8e-109 398.7 430 59.5
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 4.9e-108 395.6 443 56.7
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 7.1e-107 391.7 443 57.3
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 7.1e-107 391.7 449 57.0
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.0e-106 388.7 445 56.4
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 6.0e-106 388.7 471 55.6
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 7.8e-106 388.3 470 53.8
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 7.3e-104 381.7 463 54.9
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.2e-103 380.9 472 53.2
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.6e-103 380.6 435 56.1
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.6e-103 380.6 430 57.0
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 3.6e-103 379.4 449 52.3
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 8.1e-103 378.3 431 58.2
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.8e-102 377.1 405 58.0
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 3.1e-102 376.3 508 50.0
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 5.2e-102 375.6 435 55.9
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 6.8e-102 375.2 529 49.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.0e-101 373.6 411 57.7
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.0e-101 373.6 436 54.6
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.6e-101 373.2 515 49.7
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 3.4e-101 372.9 430 56.3
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.9e-101 371.3 436 58.0
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.9e-101 371.3 454 54.0
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.3e-100 370.9 431 55.2
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.8e-100 369.4 445 54.6
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 8.4e-100 368.2 465 53.3
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 2.4e-99 366.7 508 50.6
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.2e-99 366.3 458 52.6
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.6e-98 364.0 437 55.6
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.6e-98 364.0 441 54.0
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.6e-98 364.0 424 56.4
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.0e-97 361.3 464 53.0
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.7e-97 360.5 433 54.3
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.7e-97 360.5 466 51.5
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 3.9e-97 359.4 464 54.1
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.9e-97 359.4 472 51.7
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.3e-96 356.3 477 51.8
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 4.8e-95 352.4 477 50.9
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 2.4e-94 350.1 477 50.1
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 4.0e-94 349.4 460 51.5
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 6.9e-94 348.6 461 52.5
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.5e-93 347.4 412 56.3
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.0e-93 347.1 455 52.3
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 2.0e-93 347.1 429 51.7
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.6e-93 346.7 465 50.5
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 3.4e-93 346.3 453 51.0
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 4.4e-93 345.9 453 50.8
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 5.8e-93 345.5 408 55.9
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.3e-92 344.4 443 52.1
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.9e-92 343.2 448 51.3
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.8e-92 342.8 460 52.2
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 6.4e-92 342.0 485 48.2
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 6.4e-92 342.0 450 50.9
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 8.4e-92 341.7 454 50.2
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.4e-91 340.9 487 48.7
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 1.4e-91 340.9 436 52.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.4e-91 340.1 465 50.1
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 7.1e-91 338.6 454 51.3
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 9.3e-91 338.2 465 50.3
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.2e-90 337.8 487 48.3
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.6e-90 337.4 475 50.7
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 7.8e-90 335.1 437 52.2
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.3e-89 334.3 471 50.3
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 2.3e-89 333.6 475 47.8
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.0e-89 333.2 499 47.9
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 6.6e-89 332.0 478 49.4
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 8.7e-89 331.6 443 51.0
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.5e-88 330.9 454 50.9
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.9e-88 330.5 456 48.9
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 9.6e-88 328.2 447 50.3
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.6e-87 326.2 464 48.7
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.8e-87 325.9 472 50.0
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 4.8e-87 325.9 462 49.6
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 6.9e-86 322.0 486 47.3
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.5e-85 320.9 444 50.7
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.0e-85 320.5 455 46.8
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.4e-85 319.7 457 50.3
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 5.8e-85 318.9 456 50.0
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 5.8e-85 318.9 476 49.4
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 1.3e-84 317.8 448 48.9
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.7e-84 317.4 454 48.7
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 7.1e-83 312.0 454 48.2
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.2e-82 311.2 440 48.9
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.8e-81 307.4 464 47.2
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 3.0e-81 306.6 448 48.4
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 8.7e-81 305.1 442 47.5
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.5e-80 303.5 481 46.4
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 3.3e-80 303.1 455 47.3
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.3e-79 301.2 472 47.0
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 3.7e-79 299.7 463 47.7
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 8.1e-79 298.5 486 44.4
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 8.1e-79 298.5 458 47.4
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.8e-78 297.4 459 46.4
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 2.4e-78 297.0 442 47.7
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 4.0e-78 296.2 436 47.9
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 5.3e-78 295.8 382 52.9
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 5.3e-78 295.8 444 48.2
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.5e-77 294.3 472 46.6
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 3.4e-77 293.1 451 47.2
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 7.6e-77 292.0 490 44.9
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 1.0e-76 291.6 461 44.3
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.7e-76 290.8 424 46.9
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.2e-76 290.4 482 44.0
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 2.2e-76 290.4 448 47.3
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 4.9e-76 289.3 448 47.1
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 8.4e-76 288.5 457 46.2
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 8.4e-76 288.5 457 46.2
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 8.4e-76 288.5 457 46.2
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.7e-74 283.5 453 47.7
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 2.7e-74 283.5 457 46.2
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 6.0e-74 282.3 470 44.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 7.9e-74 282.0 446 46.9
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 3.9e-73 279.6 459 43.8
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 8.7e-73 278.5 436 47.2
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.9e-72 277.3 451 45.0
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.1e-71 273.9 437 47.1
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.6e-69 266.9 465 45.6
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 7.6e-69 265.4 443 45.4
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 2.9e-68 263.5 459 42.9
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 5.0e-68 262.7 443 45.4
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 9.3e-67 258.5 487 42.3
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 6.1e-66 255.8 459 44.0
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 7.9e-66 255.4 420 43.6
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.3e-62 242.7 337 53.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.4e-57 228.0 486 40.1
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 2.4e-54 217.2 434 40.6
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.2e-53 214.9 344 47.4
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 5.5e-51 206.1 445 37.5
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 5.5e-51 206.1 445 37.5
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-50 204.5 445 37.3
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 8.8e-49 198.7 438 37.9
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.5e-48 198.0 434 38.5
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 2.6e-45 187.2 157 65.0
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.5e-43 181.4 423 37.6
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.1e-42 177.6 170 60.6
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.4e-41 174.9 461 37.1
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 5.3e-38 162.9 348 39.7
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 1.7e-36 157.9 448 34.6
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 8.3e-31 139.0 79 83.5
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.4e-25 121.7 103 65.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.9e-19 101.3 137 48.9
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 2.1e-18 97.8 89 61.8
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 1.2e-16 92.0 494 26.3
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-16 91.3 131 47.3
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 2.0e-16 91.3 131 47.3
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 3.4e-16 90.5 117 52.1
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 4.9e-15 86.7 65 64.6
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.8e-14 84.7 283 31.4
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 5.4e-14 83.2 86 52.3
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-13 82.0 125 45.6
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-13 81.6 125 45.6
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 6.6e-12 76.3 124 46.8
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 8.6e-12 75.9 78 57.7
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 3.6e-10 70.5 248 31.0
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 4.7e-10 70.1 144 41.0
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.2e-10 69.7 79 64.6
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.4e-09 68.6 86 41.9
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.4e-06 57.8 64 51.6
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 5.4e-06 56.6 107 37.4
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 9.2e-06 55.8 123 32.5


User provided reference genes

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