Gene: AT1G52380
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G52380
- Transcript Identifier AT1G52380.1
- Gene Type Coding gene
- Location Chr1 : 19509979-19511301 : positive
Gene Family Information
- ID HOM05D003909
- #Genes/#Species 178/98
- Phylogenetic origin
- ID ORTHO05D004478
- #Genes/#Species 179/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G52380.1
- uniprot Q9C829
Descriptions
- Description NUP50 (Nucleoporin 50 kDa) protein
- Computational description NUP50 (Nucleoporin 50 kDa) protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993), Nuclear pore complex, NUP2/50/61 (InterPro:IPR015007); BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein (TAIR:AT3G15970.1); Has 1614 Blast hits to 1303 proteins in 238 species: Archae - 0; Bacteria - 48; Metazoa - 835; Fungi - 410; Plants - 179; Viruses - 3; Other Eukaryotes - 139 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046907 | IEA | Gene Ontology | intracellular transport | |
| GO:0046907 | IEA | InterPro | intracellular transport | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0051028 | IEA | GOA Database | mRNA transport | |
| GO:0050790 | IEA | GOA Database | regulation of catalytic activity |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005096 | IBA | Gene Ontology | GTPase activator activity | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005643 | IEA | GOA Database | nuclear pore | |
| GO:0005643 | IBA | Gene Ontology | nuclear pore | 1 |
| GO:0005643 | IEA | InterPro | nuclear pore | |
| GO:0005634 | IDA IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | IBA | Gene Ontology | cytosol | 1 |
| GO:0005654 | IEA | GOA Database | nucleoplasm | |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 23.5.1.1.5.1 | Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP50) |