Gene: Sopen06g025020
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g025020
- Transcript Identifier Sopen06g025020.1
- Gene Type Coding gene
- Location Spenn-ch06 : 52432361-52433701 : positive
Gene Family Information
- ID HOM05D003909
- #Genes/#Species 178/98
- Phylogenetic origin
- ID ORTHO05D004478
- #Genes/#Species 179/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g025020.1
Descriptions
- Description NUP50 (Nucleoporin 50 kDa) protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: intracellular transport | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ran binding protein 1 , Pleckstrin homology-type , Nuclear pore complex, NUP2/50/61 | BEST Arabidopsis thaliana protein match is: NUP50 (Nucleoporin 50 kDa) protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046907 | IEA | InterPro | intracellular transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G52380 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005643 | IEA | InterPro | nuclear pore | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G52380 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G52380 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 23.5.1.1.5.1 | Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.nucleoporin (NUP50) |