Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 8.6e-97 357.1 190 100.0
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 4.9e-92 341.3 190 95.8
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.1e-26 123.2 63 92.1
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.8e-22 110.2 107 56.1
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 2.4e-22 109.8 107 56.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 2.6e-21 106.3 107 56.1
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 1.0e-20 104.4 107 55.1
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 1.0e-20 104.4 107 55.1
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 1.3e-20 104.0 107 55.1
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 2.9e-20 102.8 108 54.6
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 2.9e-20 102.8 107 54.2
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 3.8e-20 102.4 107 53.3
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 5.0e-20 102.1 107 53.3
TAR376G0225 Trochodendron aralioides HOM05D008758 ORTHO05D009412 6.5e-20 101.7 96 70.8
TAR376G0381 Trochodendron aralioides HOM05D008758 ORTHO05D009412 8.5e-20 101.3 71 90.1
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 1.4e-19 100.5 107 52.3
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 1.9e-19 100.1 107 53.3
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 3.2e-19 99.4 107 53.3
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 3.2e-19 99.4 107 54.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 3.2e-19 99.4 107 51.4
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 5.5e-19 98.6 107 51.4
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 9.4e-19 97.8 107 52.3
TAR376G0113 Trochodendron aralioides HOM05D008758 ORTHO05D009412 1.2e-18 97.4 71 87.3
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 2.1e-18 96.7 107 50.5
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 3.6e-18 95.9 107 50.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 3.6e-18 95.9 107 52.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 4.6e-18 95.5 107 51.4
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 4.6e-18 95.5 107 52.3
TAR376G0475 Trochodendron aralioides HOM05D008758 ORTHO05D009412 4.6e-18 95.5 71 85.9
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 7.9e-18 94.7 107 49.5
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 7.9e-18 94.7 107 50.5
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 1.0e-17 94.4 69 66.7
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.0e-17 94.4 107 48.6
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.0e-17 94.4 116 49.1
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 1.0e-17 94.4 107 49.5
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 1.0e-17 94.4 107 48.6
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.4e-17 94.0 107 52.3
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 2.3e-17 93.2 59 79.7
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 2.3e-17 93.2 69 66.7
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 3.0e-17 92.8 107 50.5
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 3.0e-17 92.8 48 91.7
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.0e-17 92.8 107 50.5
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 3.0e-17 92.8 107 50.5
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 3.9e-17 92.4 96 53.1
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 5.1e-17 92.0 103 50.5
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 6.7e-17 91.7 107 51.4
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 6.7e-17 91.7 107 48.6
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 6.7e-17 91.7 107 48.6
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 6.7e-17 91.7 107 48.6
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 6.7e-17 91.7 107 48.6
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 6.7e-17 91.7 107 50.5
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 6.7e-17 91.7 48 89.6
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 6.7e-17 91.7 48 89.6
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 6.7e-17 91.7 107 50.5
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 8.8e-17 91.3 114 49.1
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 8.8e-17 91.3 94 54.3
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 8.8e-17 91.3 48 89.6
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 8.8e-17 91.3 107 48.6
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 1.1e-16 90.9 107 48.6
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 1.1e-16 90.9 107 47.7
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 1.1e-16 90.9 48 87.5
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 1.1e-16 90.9 59 76.3
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 1.5e-16 90.5 59 76.3
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 1.5e-16 90.5 107 49.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 1.5e-16 90.5 107 48.6
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 2.0e-16 90.1 107 47.7
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 2.0e-16 90.1 107 47.7
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 2.0e-16 90.1 107 47.7
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 2.5e-16 89.7 107 47.7
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 3.3e-16 89.4 48 89.6
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 3.3e-16 89.4 48 89.6
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.3e-16 89.4 48 89.6
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 4.3e-16 89.0 107 50.5
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 4.3e-16 89.0 48 87.5
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 5.7e-16 88.6 48 87.5
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 5.7e-16 88.6 48 87.5
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 5.7e-16 88.6 85 55.3
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 7.4e-16 88.2 48 85.4
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 7.4e-16 88.2 107 50.5
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 7.4e-16 88.2 48 85.4
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 9.7e-16 87.8 48 85.4
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 9.7e-16 87.8 48 85.4
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 1.3e-15 87.4 69 62.3
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.3e-15 87.4 48 85.4
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 1.3e-15 87.4 107 49.5
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 1.3e-15 87.4 59 72.9
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 1.3e-15 87.4 107 47.7
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.3e-15 87.4 107 47.7
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.3e-15 87.4 107 47.7
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.3e-15 87.4 107 47.7
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 1.7e-15 87.0 48 83.3
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 2.2e-15 86.7 48 85.4
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 2.2e-15 86.7 48 85.4
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.2e-15 86.7 107 46.7
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 2.8e-15 86.3 85 55.3
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.7e-15 85.9 85 54.1
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 3.7e-15 85.9 48 85.4
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 6.3e-15 85.1 220 33.2
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 6.3e-15 85.1 85 56.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 6.3e-15 85.1 114 47.4
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 6.3e-15 85.1 48 83.3
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 6.3e-15 85.1 48 83.3
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 8.2e-15 84.7 48 83.3
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 2.4e-14 83.2 48 81.2
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 2.4e-14 83.2 48 83.3
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 2.4e-14 83.2 48 83.3
TAR291G0003 Trochodendron aralioides HOM05D008758 ORTHO05D009412 3.1e-14 82.8 71 78.9
TAR375G0878 Trochodendron aralioides HOM05D008758 ORTHO05D009412 3.1e-14 82.8 71 78.9
TAR633G0918 Trochodendron aralioides HOM05D008758 ORTHO05D009412 3.1e-14 82.8 71 74.6
TAR291G0001 Trochodendron aralioides HOM05D008758 ORTHO05D009412 5.3e-14 82.0 71 77.5
TAR375G0339 Trochodendron aralioides HOM05D008758 ORTHO05D009412 5.3e-14 82.0 71 77.5
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 6.9e-14 81.6 57 70.2
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.6e-13 79.7 115 40.9
Nn2g15429 Nelumbo nucifera HOM05D008758 ORTHO05D009412 2.6e-13 79.7 72 70.8
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 3.4e-13 79.3 48 81.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.9e-12 76.3 43 79.1
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.9e-12 76.3 48 72.9
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 6.5e-12 75.1 50 68.0
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 7.2e-11 71.6 69 53.6
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 9.4e-11 71.2 48 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 1.2e-10 70.9 48 68.8
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.2e-10 70.9 69 49.3
Nn7g36171 Nelumbo nucifera HOM05D008758 ORTHO05D009412 7.9e-10 68.2 71 59.2
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 1.8e-09 67.0 50 62.0
Potri.016G052200 Populus trichocarpa HOM05D008758 ORTHO05D009412 2.3e-09 66.6 71 57.7
Solyc05g053060.1 Solanum lycopersicum HOM05D008319 ORTHO05D009412 2.0e-08 63.5 73 56.2
Sopen05g031580 Solanum pennellii HOM05D008319 ORTHO05D009412 2.0e-08 63.5 73 56.2
Atru.chr1.1009 Acer truncatum HOM05D008758 ORTHO05D009412 3.3e-08 62.8 71 57.7
Atru.chr1.977 Acer truncatum HOM05D008758 ORTHO05D009412 3.3e-08 62.8 71 57.7
QL07p021867 Quercus lobata HOM05D008758 ORTHO05D009412 7.4e-08 61.6 70 61.4
PGSC0003DMG400027225 Solanum tuberosum HOM05D008319 ORTHO05D009412 1.3e-07 60.8 71 54.9
TAR633G0082 Trochodendron aralioides HOM05D008758 ORTHO05D009412 1.7e-07 60.5 48 75.0
Atru.chr1.1012 Acer truncatum HOM05D008758 ORTHO05D009412 2.8e-07 59.7 71 56.3
Potri.006G056000 Populus trichocarpa HOM05D008758 ORTHO05D009412 3.7e-07 59.3 71 54.9
Atru.chr1.980 Acer truncatum HOM05D008758 ORTHO05D009412 4.8e-07 58.9 71 56.3
Atru.chr1.1010 Acer truncatum HOM05D008758 ORTHO05D009412 6.3e-07 58.5 71 54.9
Atru.chr1.1011 Acer truncatum HOM05D008758 ORTHO05D009412 6.3e-07 58.5 71 53.5
Nn2g15427 Nelumbo nucifera HOM05D008758 ORTHO05D009412 6.3e-07 58.5 70 60.0
Nitab4.5_0003074g0030 Nicotiana tabacum HOM05D008319 ORTHO05D009412 8.2e-07 58.2 75 53.3
PGSC0003DMG400008180 Solanum tuberosum HOM05D008319 ORTHO05D009412 8.2e-07 58.2 71 53.5
Atru.chr1.978 Acer truncatum HOM05D008758 ORTHO05D009412 1.1e-06 57.8 71 54.9
TWI09G0015 Tripterygium wilfordii HOM05D012217 ORTHO05D013836 1.1e-06 57.8 73 52.1
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.4e-06 57.4 89 39.3
Nn2g15428 Nelumbo nucifera HOM05D008758 ORTHO05D009412 1.4e-06 57.4 61 60.7
Peaxi162Scf00164g01135 Petunia axillaris HOM05D008319 ORTHO05D009412 1.4e-06 57.4 88 45.5
Atru.chr1.1014 Acer truncatum HOM05D008758 ORTHO05D009412 1.8e-06 57.0 62 56.5
Aqoxy2G03622 Aquilegia oxysepala HOM05D008758 ORTHO05D009412 1.8e-06 57.0 61 52.5
Lsat_1_v5_gn_5_162761 Lactuca sativa HOM05D008319 ORTHO05D009412 2.4e-06 56.6 78 44.9
Peaxi162Scf00189g00522 Petunia axillaris HOM05D008319 ORTHO05D018042 2.4e-06 56.6 74 52.7
COL.COLO4_28691 Corchorus olitorius HOM05D010551 ORTHO05D012668 3.1e-06 56.2 68 51.5
Cpa.g.sc85.131 Carica papaya HOM05D008319 ORTHO05D009412 4.1e-06 55.8 69 49.3
COL.COLO4_17021 Corchorus olitorius HOM05D010551 ORTHO05D012668 4.1e-06 55.8 68 51.5
Thecc.05G163500 Theobroma cacao HOM05D010551 ORTHO05D012668 5.3e-06 55.5 69 55.1
Sabra06G0039600 Salix brachista HOM05D008758 ORTHO05D009412 7.0e-06 55.1 71 53.5
Solyc10g080370.1 Solanum lycopersicum HOM05D008319 ORTHO05D009412 7.0e-06 55.1 71 54.9


User provided reference genes

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