Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1546.9 798 100.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 1176.8 807 74.6
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 7.3e-307 1057.0 807 68.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 3.6e-298 1028.1 797 68.0
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 6.2e-298 1027.3 805 67.0
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.9e-297 1023.5 788 68.7
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 1.1e-291 1006.5 799 66.1
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 2.1e-290 1002.3 784 68.5
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 1.4e-289 999.6 815 65.3
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 1.8e-289 999.2 790 66.6
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 1.4e-286 989.6 787 65.8
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 5.4e-286 987.6 807 64.8
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 1.3e-284 983.0 790 66.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 8.7e-284 980.3 790 65.4
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 3.3e-283 978.4 787 64.9
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 7.3e-283 977.2 789 64.5
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 7.3e-283 977.2 789 65.1
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 5.8e-280 967.6 786 64.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 6.4e-279 964.1 789 64.4
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 6.0e-277 957.6 792 64.4
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 1.6e-274 949.5 793 63.2
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 3.7e-274 948.3 797 63.1
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 6.2e-274 947.6 790 64.2
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.8e-273 946.0 789 63.6
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.6e-272 942.2 792 63.5
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 4.5e-272 941.4 787 63.8
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 7.6e-272 940.6 792 63.4
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 7.6e-272 940.6 792 63.4
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 8.4e-271 937.2 792 63.4
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 9.3e-270 933.7 821 61.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.7e-269 932.2 793 62.8
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 2.3e-268 929.1 803 59.9
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 2.8e-266 922.2 790 62.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 9.0e-265 917.1 783 61.2
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 8.4e-263 910.6 798 59.9
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 2.5e-262 909.1 784 61.1
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 5.5e-262 907.9 697 68.7
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 5.5e-262 907.9 803 59.8
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 2.1e-261 906.0 798 59.8
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 3.0e-260 902.1 785 61.4
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 9.7e-259 897.1 797 59.2
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 1.3e-258 896.7 784 60.2
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 1.1e-257 893.6 798 61.0
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 2.6e-256 889.0 778 61.4
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 2.2e-255 885.9 783 59.1
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 8.5e-255 884.0 785 59.0
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 9.3e-254 880.6 791 59.4
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 3.6e-253 878.6 796 58.3
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 1.8e-252 876.3 847 56.1
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 3.0e-252 875.5 792 59.2
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 3.0e-252 875.5 786 58.7
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 1.5e-251 873.2 788 59.0
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 5.3e-249 864.8 785 58.2
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 4.7e-245 851.7 807 58.4
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 6.1e-245 851.3 788 58.1
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 7.9e-245 850.9 812 58.3
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 5.1e-244 848.2 793 57.0
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 6.7e-244 847.8 786 58.3
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 1.3e-242 843.6 840 55.5
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 3.7e-242 842.0 787 59.7
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 1.0e-239 833.9 846 54.5
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 3.2e-238 828.9 600 72.3
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 1.8e-236 823.2 846 55.0
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 2.3e-236 822.8 683 65.0
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 3.9e-236 822.0 795 57.2
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 5.7e-235 818.1 852 53.2
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 7.4e-235 817.8 842 55.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 4.1e-233 812.0 824 54.2
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 9.1e-233 810.8 858 52.2
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 2.9e-231 805.8 835 53.3
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 9.4e-230 800.8 828 52.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 2.7e-229 799.3 851 52.3
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 2.7e-229 799.3 851 52.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 4.7e-229 798.5 851 53.2
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 4.7e-229 798.5 851 53.2
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.4e-228 797.0 658 66.7
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 2.0e-227 793.1 837 52.4
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 4.4e-227 792.0 802 55.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 2.8e-226 789.3 686 60.2
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 4.8e-226 788.5 732 57.4
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 1.8e-225 786.6 814 54.7
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 7.0e-225 784.6 837 52.0
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 1.2e-219 767.3 722 56.4
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 3.4e-219 765.8 720 57.4
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 4.5e-216 755.4 858 50.0
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.3e-210 734.6 786 55.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 3.8e-207 725.7 789 50.8
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 1.9e-206 723.4 812 50.4
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 2.5e-206 723.0 530 69.2
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.8e-200 701.4 797 49.1
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 1.4e-196 690.6 640 57.2
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 5.2e-196 688.7 671 55.4
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.4e-193 679.9 737 50.9
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 4.0e-188 662.5 563 62.2
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 7.5e-187 658.3 488 69.3
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 1.0e-183 647.9 637 55.6
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 1.1e-182 644.4 426 75.1
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 3.3e-182 642.9 546 59.9
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.7e-175 620.5 714 48.9
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 5.1e-175 619.0 789 47.3
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 2.1e-152 543.9 437 65.9
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 1.6e-144 517.7 795 42.6
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 6.0e-144 515.8 841 40.4
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.5e-137 493.8 337 70.9
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 1.7e-133 481.1 815 38.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 8.2e-133 478.8 799 38.3
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 5.5e-121 439.5 416 59.6
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 2.3e-95 354.4 428 49.1
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 7.8e-83 312.8 563 35.7
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 2.5e-65 254.6 210 60.5
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 5.2e-63 246.9 265 55.1
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.6e-46 191.4 232 52.2
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 7.6e-46 189.9 198 56.6
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.2e-40 170.2 157 58.6
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.4e-36 159.1 164 56.7
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 2.5e-36 158.3 110 75.5
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 3.3e-33 147.9 117 59.8
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.6e-32 145.6 96 76.0
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.7e-29 135.6 94 74.5
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 1.1e-28 132.9 95 72.6
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 1.3e-24 119.4 67 86.6
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.6e-24 119.0 415 27.7
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 3.2e-20 104.8 126 45.2
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 4.2e-20 104.4 67 71.6
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.2e-19 102.8 75 68.0
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 1.6e-19 102.4 70 74.3
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.6e-19 100.9 65 76.9
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.4e-18 99.4 99 52.5
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 5.7e-17 94.0 255 29.4
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.7e-16 92.4 71 62.0
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.7e-16 92.4 71 62.0
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 6.3e-16 90.5 71 60.6
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.1e-12 79.7 153 29.4
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 1.9e-12 79.0 91 45.1
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 2.5e-12 78.6 93 49.5
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 3.2e-12 78.2 75 56.0
MBI13_g37902_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.3e-08 63.9 36 72.2
Ciclev10024309m.g Citrus clementina HOM05D000366 ORTHO05D000437 2.6e-06 58.5 63 41.3
Ciclev10023419m.g Citrus clementina HOM05D000366 ORTHO05D000437 7.7e-06 57.0 63 41.3


User provided reference genes

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