Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1808.1 963 100.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 1448.0 968 78.5
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 1421.8 986 76.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 1413.7 1008 73.9
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 1397.9 986 76.5
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1397.5 1007 73.6
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1393.6 983 76.6
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 1389.0 1007 73.4
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 1383.6 1000 74.2
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 1364.4 914 78.1
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1364.0 985 73.5
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 1359.7 1009 72.3
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1357.4 912 77.6
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 1350.9 997 72.9
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1343.9 976 73.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 1342.4 1008 70.2
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 1341.6 956 73.3
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 1339.7 1006 70.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1336.6 1007 71.0
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1331.6 907 76.0
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1330.5 1003 70.4
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 1326.6 954 71.4
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1322.4 1008 70.6
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1319.7 1008 69.0
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1312.0 1008 70.0
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1308.5 1006 70.7
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1308.1 941 72.4
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 1306.2 1047 69.2
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 1304.3 1011 68.2
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 1300.4 1005 70.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1296.6 1003 69.4
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1295.4 1003 70.2
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1289.2 1011 69.6
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1286.6 984 72.4
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1286.2 1011 68.2
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1279.6 1007 68.7
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1277.7 1007 68.5
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1276.5 1007 68.7
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1275.4 1007 68.4
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1273.1 1011 70.4
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1271.1 1007 68.5
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1270.8 1011 67.1
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1270.0 937 71.7
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1269.2 982 71.1
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1267.3 1005 66.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1266.9 1007 66.9
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1265.8 956 69.9
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1265.4 982 71.6
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1264.2 939 71.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1261.5 939 71.8
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1260.4 1066 65.6
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1258.8 982 69.5
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1251.9 951 67.9
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1251.5 966 69.4
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1250.7 980 67.8
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1250.3 996 68.1
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1246.9 991 67.1
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1245.0 1012 65.7
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1243.4 1006 65.8
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1243.4 1005 66.2
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1241.9 951 67.7
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1241.9 951 67.7
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1239.2 954 67.0
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1237.2 952 67.1
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1236.1 951 67.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1235.7 951 66.8
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1235.3 950 66.7
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1234.9 924 70.0
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1233.0 946 66.7
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1231.9 1006 65.5
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1231.5 937 70.2
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1229.2 983 68.0
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1228.4 949 67.4
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1228.4 949 67.4
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1228.0 947 66.9
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1226.8 960 66.4
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1226.5 947 66.9
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1222.6 1007 66.5
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1222.2 932 70.8
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1221.8 953 66.6
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1218.8 933 68.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1218.4 944 68.5
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1217.6 1047 64.8
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1203.3 910 68.9
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1198.3 937 69.7
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1187.2 1006 63.2
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1176.0 930 70.2
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1174.8 933 66.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1173.7 806 76.1
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 0.0e+00 1132.9 965 63.1
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1092.8 896 66.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1086.6 1078 58.8
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1080.9 1028 59.1
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 3.3e-306 1055.0 909 61.4
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 7.0e-304 1047.3 918 60.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 8.8e-299 1030.4 934 62.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 5.6e-277 958.0 918 56.1
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 1.0e-275 953.7 921 56.7
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 3.4e-258 895.6 917 53.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 7.3e-253 877.9 912 53.2
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 7.1e-240 834.7 583 75.1
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.1e-211 741.1 932 45.8
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 4.8e-188 662.5 427 77.8
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 6.3e-180 635.6 489 67.1
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 9.1e-179 631.7 409 78.7
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 5.0e-169 599.4 564 59.8
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.6e-159 566.6 486 65.8
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.5e-152 544.7 489 58.1
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 3.2e-147 526.9 478 60.9
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.6e-144 516.2 369 70.7
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.1e-142 511.9 469 61.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 3.9e-137 493.4 558 52.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.2e-132 477.6 453 60.0
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.5e-104 385.2 376 59.8
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.6e-103 381.7 292 68.2
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.6e-103 381.7 323 61.3
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.3e-102 376.7 375 53.9
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.9e-102 376.3 282 67.7
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 4.5e-85 320.5 202 81.2
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.3e-80 304.3 369 51.2
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 6.1e-50 203.8 213 59.2
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.0e-49 203.0 395 37.2
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 2.0e-48 198.7 895 23.5
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.4e-46 192.6 226 53.5
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.5e-45 188.0 170 56.5
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 1.3e-44 186.0 505 27.1
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 1.7e-44 185.7 119 76.5
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.3e-28 132.1 70 95.7
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.1e-27 129.8 100 69.0
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.7e-26 124.4 88 73.9
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 2.0e-24 119.0 90 68.9
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.2e-23 115.5 90 67.8
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 1.1e-22 113.2 152 44.1
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 7.1e-22 110.5 107 57.0
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.1e-21 109.0 107 56.1
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 4.6e-21 107.8 79 67.1
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 1.0e-20 106.7 71 76.1
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.3e-20 106.3 78 67.9
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.9e-14 85.9 68 66.2
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.7e-12 79.3 61 65.6
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 7.3e-11 73.9 53 69.8
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.2e-07 62.4 98 41.8


User provided reference genes

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