Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 0.0e+00 2207.9 1133 100.0
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 0.0e+00 1359.4 1153 65.8
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 0.0e+00 1088.6 1195 53.8
TAR365G0890 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.4e-279 966.1 979 58.9
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 1.3e-227 794.3 1153 46.1
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 1.1e-212 744.6 1153 43.8
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 1.8e-197 694.1 1180 41.2
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 5.1e-197 692.6 1179 41.0
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 1.1e-191 674.9 1155 40.3
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 2.5e-183 647.1 1103 41.6
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 4.2e-183 646.4 1122 41.4
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 5.7e-180 636.0 1143 41.2
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 1.4e-170 604.7 1094 40.5
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 2.2e-168 597.4 1098 40.5
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 1.9e-167 594.3 1099 39.1
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 2.5e-167 594.0 1114 40.6
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 1.1e-162 578.6 1122 39.1
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 1.7e-160 571.2 1093 38.1
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 2.9e-160 570.5 1104 38.7
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 1.6e-158 564.7 1094 39.9
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 1.2e-156 558.5 1100 38.7
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 2.0e-156 557.8 1095 38.0
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 1.9e-151 541.2 1094 39.2
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.1e-150 537.7 1101 37.9
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 1.0e-149 535.4 998 40.5
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 1.4e-149 535.0 1058 39.6
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.8e-149 532.7 1110 37.1
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.3e-147 528.5 1094 38.5
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 1.3e-147 528.5 1097 37.1
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 9.5e-143 512.3 1073 36.3
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.2e-142 511.9 1094 37.8
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 8.0e-142 509.2 1143 36.2
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 1.8e-141 508.1 1123 35.9
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 2.9e-139 500.7 1071 36.1
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 2.0e-132 478.0 1104 35.5
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 4.4e-132 476.9 1094 37.0
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 2.4e-130 471.1 1116 35.6
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 2.1e-129 468.0 1109 35.1
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 2.7e-129 467.6 1046 34.6
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 2.5e-127 461.1 1090 35.7
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 7.6e-124 449.5 1108 35.2
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 1.3e-123 448.7 1093 35.0
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 1.4e-122 445.3 1141 32.8
vmacro04191 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 1.9e-122 444.9 1144 33.2
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 1.9e-119 434.9 1102 33.7
Dinv36279 Davidia involucrata HOM05D000104 ORTHO05D005604 6.9e-117 426.4 518 52.5
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 2.2e-115 421.4 1097 33.6
TAR365G0129 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.9e-115 421.0 494 52.6
MBI19_g34717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 2.4e-114 417.9 1127 32.7
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 7.1e-114 416.4 1206 34.4
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 2.5e-111 407.9 1153 32.8
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 2.8e-110 404.4 1150 33.2
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 1.1e-106 392.5 1150 32.6
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 5.4e-106 390.2 1123 33.0
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 2.7e-105 387.9 1058 33.5
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.0e-104 386.0 1050 32.7
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.8e-104 385.2 1120 33.1
Dinv36280 Davidia involucrata HOM05D000104 ORTHO05D005604 1.5e-103 382.1 415 55.7
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 9.6e-103 379.4 1056 33.6
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 6.2e-102 376.7 1118 33.0
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 9.0e-101 372.9 1145 31.9
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 7.6e-100 369.8 1118 32.6
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 6.0e-97 360.1 1097 31.9
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 7.9e-97 359.8 1110 30.9
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 1.8e-96 358.6 1102 30.9
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 1.8e-96 358.6 1103 30.8
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 3.3e-95 354.4 1105 30.2
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 3.7e-94 350.9 1103 31.0
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 5.8e-92 343.6 1092 31.1
Ciclev10004115m.g Citrus clementina HOM05D000104 ORTHO05D005604 1.1e-90 339.3 534 45.1
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 2.7e-89 334.7 703 37.4
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 1.0e-83 316.2 1142 30.3
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 5.5e-82 310.5 1154 30.3
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 6.1e-81 307.0 1103 28.4
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 1.3e-80 305.8 1096 29.8
AUR62042660 Chenopodium quinoa HOM05D000104 ORTHO05D005604 6.7e-80 303.5 1141 28.9
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.3e-78 299.3 1102 29.0
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 8.2e-78 296.6 1140 28.9
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 5.9e-76 290.4 1105 28.3
Cpa.g.sc16.94 Carica papaya HOM05D000104 ORTHO05D005604 1.0e-75 289.7 500 41.0
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 2.8e-70 271.6 1102 28.2
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 4.1e-69 267.7 1100 27.3
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 1.2e-68 266.2 1112 27.5
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 3.4e-68 264.6 1124 28.5
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 4.5e-68 264.2 1100 27.1
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 3.8e-67 261.2 1113 26.3
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 5.2e-64 250.8 1113 28.0
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 8.5e-59 233.4 1092 27.3
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 4.7e-57 227.6 1091 25.8
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 2.3e-56 225.3 1092 25.9
CSS0020473 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 3.0e-56 224.9 374 43.3
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 4.0e-56 224.6 1091 26.9
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 1.5e-55 222.6 1092 25.8
AUR62040388 Chenopodium quinoa HOM05D000104 ORTHO05D005604 7.5e-55 220.3 1089 27.1
Cpa.g.sc16.100 Carica papaya HOM05D000104 ORTHO05D005604 4.8e-54 217.6 429 38.2
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 6.3e-54 217.2 1039 26.9
TPR.G14955 Trifolium pratense HOM05D029028 ORTHO05D030699 1.4e-53 216.1 371 41.5
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 2.4e-53 215.3 1103 25.8
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 2.4e-53 215.3 1092 26.1
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 3.1e-53 214.9 1151 26.4
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 1.6e-52 212.6 1092 25.4
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.5e-52 211.5 1094 26.7
Os06g0255200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005604 3.8e-51 208.0 390 40.0
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 8.0e-49 200.3 494 36.2
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 2.4e-45 188.7 553 34.5
CSS0040868 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 9.1e-45 186.8 245 45.3
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 7.7e-44 183.7 1091 24.5
TAR365G0692 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.0e-43 183.3 150 62.7
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 8.6e-43 180.3 266 44.4
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 4.2e-42 177.9 250 46.0
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 2.1e-41 175.6 247 46.2
Cpa.g.sc16.103 Carica papaya HOM05D000104 ORTHO05D005604 2.0e-39 169.1 189 50.8
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 1.1e-37 163.3 465 33.5
Oeu050209.1 Olea europaea HOM05D000104 ORTHO05D005604 1.8e-37 162.5 420 34.5
Actinidia06888 Actinidia chinensis HOM05D000104 ORTHO05D005604 3.8e-35 154.8 229 42.4
Cfa015504 Carpinus fangiana HOM05D000104 ORTHO05D005604 2.1e-33 149.1 155 58.7
Actinidia06887 Actinidia chinensis HOM05D000738 ORTHO05D000675 3.6e-33 148.3 197 46.2
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 7.5e-31 140.6 436 30.7
Mapoly0171s0025 Marchantia polymorpha HOM05D000104 ORTHO05D005604 1.1e-29 136.7 1281 24.5
Cc00_g33690 Coffea canephora HOM05D000104 ORTHO05D005604 1.4e-29 136.3 98 73.5
TAR365G1084 Trochodendron aralioides HOM05D000104 ORTHO05D005604 4.1e-29 134.8 119 67.2
Hma1.2p1_3230F.1_g334250 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 1.1e-26 126.7 279 35.8
SEGI_16038 Sequoiadendron giganteum HOM05D000104 ORTHO05D005604 5.6e-26 124.4 96 68.8
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 5.6e-26 124.4 90 71.1
Hma1.2p1_0728F.1_g209240 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 7.3e-26 124.0 82 81.7
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 6.2e-25 120.9 68 86.8
Eucgr.E01764 Eucalyptus grandis HOM05D000104 ORTHO05D005604 8.9e-24 117.1 121 54.5
Nitab4.5_0002766g0090 Nicotiana tabacum HOM05D000455 ORTHO05D010375 1.2e-23 116.7 104 55.8
arahy.Tifrunner.gnm1.ann1.0XZV5D Arachis hypogaea HOM05D000846 ORTHO05D001340 8.3e-22 110.5 196 41.3
Nitab4.5_0004806g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 1.4e-21 109.8 185 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1449 Anthoceros agrestis HOM05D000104 ORTHO05D005604 2.3e-19 102.4 490 25.9
SHI37476 Sapria himalayana HOM05D005377 ORTHO05D005604 8.6e-19 100.5 114 44.7
FAN12G0301 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.1e-18 100.1 55 90.9
Pp3c14_90 Physcomitrium patens HOM05D000104 ORTHO05D005604 1.1e-18 100.1 85 61.2
arahy.Tifrunner.gnm1.ann1.E69ZFU Arachis hypogaea HOM05D000104 ORTHO05D005604 3.3e-18 98.6 59 83.1
SHI00290 Sapria himalayana HOM05D000104 ORTHO05D005604 2.8e-17 95.5 78 61.5
TPR.G14627 Trifolium pratense HOM05D000319 ORTHO05D000903 2.9e-14 85.5 150 40.0
SHI00293 Sapria himalayana HOM05D000691 ORTHO05D000378 5.6e-10 71.2 73 53.4
MBI13_g06829_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 2.0e-07 62.8 45 73.3
vmacro04192 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 9.9e-07 60.5 39 82.1
Lj1A357G12 Lonicera japonica HOM05D000104 ORTHO05D005604 1.7e-06 59.7 39 79.5
arahy.Tifrunner.gnm1.ann1.TG6BII Arachis hypogaea HOM05D000181 ORTHO05D014369 2.9e-06 58.9 37 78.4
SHI00291 Sapria himalayana HOM05D000104 ORTHO05D005604 3.8e-06 58.5 214 32.2
MBI19_g34714_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 4.9e-06 58.2 37 81.1


User provided reference genes

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