Gene: AT2G28290
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G28290
- Transcript Identifier AT2G28290.2
- Gene Type Coding gene
- Location Chr2 : 12056771-12072950 : positive
Gene Family Information
- ID HOM05D000104
- #Genes/#Species 3097/100
- Phylogenetic origin
- ID ORTHO05D005604
- #Genes/#Species 155/90
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G28290.2
- symbol SYD
- Alias CHR3,CHROMATIN REMODELING COMPLEX SUBUNIT R 3
- full_name SPLAYED
- uniprot F4IHS2
Descriptions
- Description P-loop containing nucleoside triphosphate hydrolases superfamily protein
- Computational description SPLAYED (SYD); CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 37832 Blast hits to 28961 proteins in 2437 species: Archae - 315; Bacteria - 8243; Metazoa - 11351; Fungi - 6777; Plants - 2369; Viruses - 253; Other Eukaryotes - 8524 (source: NCBI BLink).
- Computational description SPLAYED (SYD); CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 37993 Blast hits to 29119 proteins in 2440 species: Archae - 313; Bacteria - 8300; Metazoa - 11402; Fungi - 6833; Plants - 2357; Viruses - 252; Other Eukaryotes - 8536 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006338 | IBA NAS | Gene Ontology | chromatin remodeling | 1 2 |
| GO:0045944 | IBA | Gene Ontology | positive regulation of transcription by RNA polymerase II | 2 |
| GO:0043044 | IBA NAS | GOA Database | ATP-dependent chromatin remodeling | |
| GO:0006952 | IEA | GOA Database | defense response | |
| GO:0009873 | IEA | GOA Database | ethylene-activated signaling pathway | |
| GO:0006355 | IEA | Gene Ontology | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0040029 | IMP | Gene Ontology | regulation of gene expression, epigenetic | 3 |
| GO:0009908 | IMP | Gene Ontology | flower development | 4 |
| GO:0010199 | IGI | Gene Ontology | organ boundary specification between lateral organs and the meristem | 1 |
| GO:0009611 | IEP TAS | Gene Ontology | response to wounding | 5 6 |
| GO:0010104 | IMP | Gene Ontology | regulation of ethylene-activated signaling pathway | 6 |
| GO:1900150 | IMP | Gene Ontology | regulation of defense response to fungus | 6 |
| GO:2000022 | IMP | Gene Ontology | regulation of jasmonic acid mediated signaling pathway | 6 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IBA | Gene Ontology | DNA binding | 2 |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | GOA Database | nucleosome-dependent ATPase activity | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0042393 | IEA | Gene Ontology | histone binding | |
| GO:0042393 | IEA | InterPro | histone binding | |
| GO:0140658 | IEA | Gene Ontology | ATPase-dependent chromatin remodeler activity | |
| GO:0016887 | ISS | Gene Ontology | ATP hydrolysis activity | 4 |
| GO:0003682 | IPI | Gene Ontology | chromatin binding | 7 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 8 |
| GO:0008094 | IBA | Gene Ontology | ATPase, acting on DNA | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 2 9 |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005829 | HDA | Gene Ontology | cytosol | 10 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR029295 | Snf2, ATP coupling domain |
| IPR000330 | SNF2, N-terminal |
| IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Mapman id | Description |
|---|---|
| 12.4.1.1.1 | Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU |