Gene: Sopen11g023970

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g023970
  • Transcript Identifier Sopen11g023970.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 58466682-58495737 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g023970.1

Descriptions

  • Description Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. | SPLAYED (SYD) | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase/SANT-associated, DNA binding , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: Homeotic gene regulator
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1900150
ISO
PLAZA Integrative Orthologyregulation of defense response to fungus AT2G28290
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT2G28290
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT2G28290
GO:0010104
ISO
PLAZA Integrative Orthologyregulation of ethylene-activated signaling pathway AT2G28290
GO:2000022
ISO
PLAZA Integrative Orthologyregulation of jasmonic acid mediated signaling pathway AT2G28290
GO:0010199
ISO
PLAZA Integrative Orthologyorgan boundary specification between lateral organs and the meristem AT2G28290
GO:0040029
ISO
PLAZA Integrative Orthologyregulation of gene expression, epigenetic AT2G28290

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
IEA
InterProhistone binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G28290
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT2G28290

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G28290
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G28290

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR029295 Snf2, ATP coupling domain
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR038718 SNF2-like, N-terminal domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.4.1.1.1 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU