Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 0.0e+00 1159.8 597 100.0
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 0.0e+00 1159.8 597 100.0
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.0e-292 1007.3 600 87.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 3.6e-290 1001.1 612 85.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.5e-288 995.7 615 83.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 2.3e-281 971.8 599 85.5
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 3.3e-280 968.0 612 82.4
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 7.4e-280 966.8 600 84.7
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-279 965.7 600 84.7
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.7e-279 965.7 600 84.7
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 2.2e-279 965.3 596 85.2
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 2.6e-277 958.4 597 84.4
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 5.2e-273 944.1 600 83.0
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-272 942.2 600 82.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-257 891.7 598 80.9
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.4e-254 882.1 604 76.2
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-239 833.2 598 76.1
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.6e-234 816.2 615 70.2
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.1e-230 803.5 595 71.3
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.9e-207 725.7 633 62.4
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.4e-206 723.4 613 64.1
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.1e-203 713.8 623 62.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.6e-202 709.9 607 63.8
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.0e-200 703.0 610 61.5
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.6e-200 702.6 636 61.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 4.5e-200 701.8 627 61.2
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 2.9e-199 699.1 614 61.2
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 8.4e-199 697.6 616 60.1
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 3.2e-198 695.7 617 60.6
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.2e-198 695.3 611 64.0
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.0e-196 689.1 617 62.1
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 3.0e-196 689.1 617 61.8
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 8.7e-196 687.6 617 61.8
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 8.7e-196 687.6 624 60.3
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 4.8e-194 681.8 625 59.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.8e-193 679.9 625 59.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 6.9e-193 677.9 620 61.0
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 6.9e-193 677.9 623 60.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.6e-192 676.0 617 58.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 5.8e-192 674.9 597 60.8
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.9e-191 671.8 623 60.0
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 8.4e-191 671.0 629 58.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.5e-190 668.3 622 59.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 7.1e-190 667.9 629 58.2
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 7.1e-190 667.9 629 58.5
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.3e-190 667.5 622 60.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 2.1e-189 666.4 614 59.8
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.1e-189 666.4 623 59.7
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.0e-188 664.1 632 57.3
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.3e-188 663.7 622 60.5
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 5.6e-187 658.3 606 58.9
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 5.6e-187 658.3 621 59.4
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 7.4e-187 657.9 628 59.4
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 4.8e-186 655.2 602 60.8
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 8.2e-186 654.4 598 60.0
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 5.8e-184 648.3 609 58.9
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 7.6e-184 647.9 618 57.9
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.8e-183 645.6 630 58.7
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 3.8e-183 645.6 616 57.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.9e-182 643.3 616 58.6
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.9e-182 643.3 604 59.6
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 4.2e-182 642.1 607 57.3
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 7.1e-182 641.3 611 57.4
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.2e-181 640.6 599 58.4
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.2e-181 640.6 611 57.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.6e-181 640.2 595 58.2
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.1e-181 639.8 616 56.2
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 4.6e-181 638.6 629 56.4
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.6e-181 638.6 610 57.0
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 6.0e-181 638.3 626 56.5
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.0e-180 637.5 607 57.2
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 2.3e-180 636.3 606 57.4
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 3.9e-180 635.6 610 60.2
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 3.9e-180 635.6 593 59.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 6.7e-180 634.8 625 57.3
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 6.7e-180 634.8 632 55.4
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.1e-179 634.0 632 56.2
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.5e-179 633.6 607 59.0
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.9e-179 633.3 631 55.8
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 9.7e-179 630.9 402 83.1
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 2.8e-178 629.4 595 58.2
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.7e-178 629.0 635 56.2
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 4.8e-178 628.6 642 54.8
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.1e-177 627.5 580 59.7
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.8e-177 626.7 614 56.2
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 4.1e-177 625.5 627 56.3
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.0e-176 623.2 610 57.5
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.4e-176 622.5 607 57.0
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 5.9e-176 621.7 597 59.0
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.0e-175 620.9 594 58.6
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.3e-175 620.5 602 57.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.3e-175 620.5 613 57.4
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.3e-175 620.5 636 54.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.2e-175 619.8 615 57.4
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.8e-175 619.0 610 56.1
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.5e-174 616.3 610 55.7
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.3e-174 614.4 630 54.8
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.6e-173 612.1 597 57.6
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 7.9e-173 611.3 613 56.6
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.8e-172 610.1 592 55.9
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 5.1e-172 608.6 601 56.2
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 7.4e-171 604.7 628 53.8
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.8e-170 602.1 552 60.7
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.6e-168 596.3 503 67.4
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 3.4e-168 595.9 632 54.4
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.9e-167 592.8 505 62.4
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.3e-159 567.4 626 53.5
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 1.7e-159 567.0 624 53.2
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 3.2e-150 536.2 530 58.3
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 5.7e-147 525.4 635 48.8
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.0e-143 514.6 576 50.2
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.1e-142 511.1 547 54.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 3.4e-139 499.6 610 48.4
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 3.4e-139 499.6 590 49.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.9e-135 486.5 508 56.1
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.5e-131 474.2 277 88.1
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 9.8e-131 471.5 591 48.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.8e-130 469.9 669 43.0
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.4e-124 451.1 384 67.2
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 3.0e-124 449.9 384 66.9
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 2.7e-120 436.8 384 65.9
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 5.6e-118 429.1 476 54.6
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.5e-115 421.0 477 54.3
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 3.7e-114 416.4 503 49.7
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.6e-109 401.0 515 49.1
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 2.3e-108 397.1 238 85.3
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 1.7e-106 391.0 642 40.5
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-104 384.8 394 57.4
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 2.6e-99 367.1 416 52.6
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 3.5e-96 356.7 646 37.8
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 3.5e-88 330.1 589 38.0
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.5e-86 323.9 278 61.2
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 9.3e-81 305.4 242 75.2
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 3.5e-80 303.5 146 97.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.4e-78 295.8 362 51.1
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.4e-78 295.8 362 51.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.8e-77 293.9 434 45.9
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 3.9e-71 273.5 240 60.0
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.6e-69 268.1 545 36.5
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-68 264.6 156 87.2
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 8.5e-58 229.2 203 62.1
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 3.6e-56 223.8 770 28.4
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 1.7e-42 178.3 565 29.7
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.0e-39 167.5 491 29.5
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.8e-36 158.3 548 28.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.5e-35 153.7 177 46.9
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.1e-33 149.1 328 34.5
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.8e-18 97.4 83 55.4
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 6.6e-18 96.7 60 76.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 3.3e-17 94.4 248 31.9
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 1.2e-16 92.4 135 50.4
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 7.5e-14 83.2 63 65.1
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.3e-10 72.4 71 57.7
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 5.2e-07 60.5 41 70.7
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 3.4e-06 57.8 43 62.8


User provided reference genes

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