Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 2.4e-257 891.7 475 100.0
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 5.1e-183 644.8 466 77.5
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 1.4e-177 626.7 440 75.9
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 7.9e-176 620.9 429 77.4
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 3.1e-172 609.0 513 70.4
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 8.5e-170 600.9 450 75.1
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 8.5e-170 600.9 450 75.1
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 1.9e-169 599.7 515 69.9
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 2.2e-165 586.3 518 68.5
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 2.1e-144 516.5 450 63.6
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 9.9e-126 454.5 473 55.0
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 9.3e-100 368.2 481 49.3
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 6.9e-95 352.1 460 48.9
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 1.4e-92 344.4 467 49.0
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 5.5e-92 342.4 467 48.8
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 2.1e-91 340.5 364 49.7
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 4.6e-91 339.3 496 45.8
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 3.9e-90 336.3 366 52.5
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 3.3e-89 333.2 485 47.6
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 4.3e-89 332.8 474 48.3
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 4.3e-89 332.8 474 48.3
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 5.6e-89 332.4 382 49.7
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 3.1e-87 326.6 480 47.3
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 6.9e-87 325.5 464 48.5
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 4.5e-86 322.8 369 49.3
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 3.8e-85 319.7 484 46.5
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 1.1e-84 318.2 372 48.1
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 1.4e-84 317.8 469 47.5
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.9e-84 317.4 380 49.2
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 9.3e-84 315.1 411 46.7
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 9.3e-84 315.1 411 46.7
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 2.1e-83 313.9 402 48.5
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 4.6e-83 312.8 389 48.8
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 6.0e-83 312.4 478 45.8
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 1.3e-82 311.2 402 46.5
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 1.3e-82 311.2 381 47.8
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 3.0e-82 310.1 369 47.7
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 3.0e-82 310.1 376 48.7
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 3.9e-82 309.7 415 45.5
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 5.1e-82 309.3 393 48.3
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.1e-81 308.1 447 47.9
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 3.3e-81 306.6 470 46.6
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 4.3e-81 306.2 364 47.5
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 5.7e-81 305.8 369 48.2
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 2.2e-80 303.9 385 46.2
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 2.4e-79 300.4 378 47.4
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 2.4e-79 300.4 459 46.2
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 5.3e-79 299.3 381 46.5
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 1.2e-78 298.1 413 45.3
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 1.3e-77 294.7 490 41.4
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 2.9e-77 293.5 399 43.6
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 5.0e-77 292.7 190 79.5
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 5.0e-77 292.7 406 44.6
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 6.5e-77 292.4 512 42.2
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 1.4e-76 291.2 396 45.2
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 3.2e-76 290.0 518 42.1
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 4.2e-76 289.7 390 46.9
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 5.5e-76 289.3 401 43.4
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 7.2e-76 288.9 447 43.6
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 1.2e-75 288.1 513 38.8
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 6.1e-75 285.8 384 44.3
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 1.3e-74 284.6 490 42.0
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 1.8e-74 284.3 409 42.5
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 8.8e-74 282.0 376 44.7
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 1.1e-73 281.6 410 42.4
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 9.7e-73 278.5 411 44.0
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 3.4e-70 270.0 383 43.6
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 7.7e-70 268.9 341 45.7
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.0e-69 268.5 386 41.5
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 2.9e-69 266.9 551 38.5
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 2.9e-69 266.9 416 40.6
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 3.8e-69 266.5 317 46.4
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 5.0e-69 266.2 429 41.7
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.9e-68 264.2 278 51.4
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 1.4e-63 248.1 278 48.9
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 4.1e-63 246.5 394 40.9
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 1.2e-62 245.0 419 39.9
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.4e-62 243.4 366 43.2
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 1.0e-61 241.9 430 37.4
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.2e-58 229.6 367 40.3
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 5.2e-58 229.6 467 36.6
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 2.6e-57 227.3 382 39.3
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 3.3e-57 226.9 277 46.9
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 2.8e-56 223.8 350 43.1
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 1.2e-54 218.4 277 45.5
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 4.5e-54 216.5 447 39.6
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 7.7e-54 215.7 472 39.2
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 1.9e-52 211.1 400 37.2
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 2.7e-46 190.7 439 33.0
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 3.8e-45 186.8 291 46.7
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 6.5e-45 186.0 309 39.8
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.5e-44 184.9 365 36.4
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.2e-41 175.3 214 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 2.0e-41 174.5 484 29.8
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 2.0e-38 164.5 374 32.6
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 3.5e-38 163.7 490 30.2
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 4.0e-34 150.2 211 41.7
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 5.4e-31 139.8 275 42.5
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 5.9e-30 136.3 106 62.3
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 7.8e-30 136.0 218 39.4
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 9.8e-25 119.0 161 46.0
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 3.0e-21 107.5 397 26.4
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 9.5e-20 102.4 58 79.3
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 7.5e-17 92.8 105 51.4
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 3.7e-16 90.5 152 38.8
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 9.2e-15 85.9 58 70.7
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 2.0e-09 68.2 80 47.5
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 1.4e-07 62.0 130 32.3
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.4e-07 62.0 128 31.2
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 1.9e-07 61.6 63 54.0
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 1.9e-07 61.6 130 31.5
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 1.9e-07 61.6 130 31.5
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 1.9e-07 61.6 130 31.5
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 2.4e-07 61.2 132 31.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 2.4e-07 61.2 126 31.0
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 3.2e-07 60.8 132 31.1
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 3.2e-07 60.8 130 31.5
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 4.1e-07 60.5 101 34.7
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 4.1e-07 60.5 132 31.1
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 4.1e-07 60.5 105 36.2
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 5.4e-07 60.1 137 29.9
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 5.4e-07 60.1 127 33.9
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 7.1e-07 59.7 130 32.3
Nitab4.5_0022301g0010 Nicotiana tabacum HOM05D007081 ORTHO05D008834 1.2e-06 58.9 81 46.9
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 1.2e-06 58.9 127 33.9
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 2.1e-06 58.2 126 34.1
Aa31LG10G6030 Aethionema arabicum HOM05D005384 ORTHO05D006477 2.7e-06 57.8 132 31.8
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 2.7e-06 57.8 183 41.0
Mapoly0005s0121 Marchantia polymorpha HOM05D005384 ORTHO05D006477 2.7e-06 57.8 132 32.6
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 4.6e-06 57.0 127 31.5
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 4.6e-06 57.0 132 31.1
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 4.6e-06 57.0 125 32.0
Os02g0167500 Oryza sativa ssp. japonica HOM05D005384 ORTHO05D006477 4.6e-06 57.0 123 33.3
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 4.6e-06 57.0 130 32.3
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 6.0e-06 56.6 113 31.0
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 6.0e-06 56.6 130 27.7
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 6.0e-06 56.6 139 28.8
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 7.8e-06 56.2 136 29.4
Aqoxy2G03702_Aqoxy2G03703 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 7.8e-06 56.2 136 29.4
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 7.8e-06 56.2 136 29.4
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 7.8e-06 56.2 138 27.5
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 7.8e-06 56.2 126 31.0
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 7.8e-06 56.2 126 30.2
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 7.8e-06 56.2 132 30.3
Thecc.04G058100 Theobroma cacao HOM05D005384 ORTHO05D006477 7.8e-06 56.2 125 32.8


User provided reference genes

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