Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.3e-142 509.6 244 100.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-91 339.7 289 61.9
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 2.6e-90 335.9 286 60.5
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 4.9e-89 331.6 286 59.8
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-88 328.6 287 59.6
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 7.1e-88 327.8 289 60.2
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 9.3e-88 327.4 289 59.2
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 4.6e-87 325.1 289 59.9
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-86 323.6 286 60.8
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-86 323.2 289 59.5
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-86 323.2 289 59.5
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-86 323.2 289 59.5
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 1.5e-85 320.1 290 59.7
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 2.5e-85 319.3 285 60.0
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.5e-85 319.3 290 59.7
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 4.8e-84 315.1 292 59.6
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.3e-84 314.7 219 73.5
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-82 308.5 247 64.8
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 4.5e-82 308.5 287 57.1
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 6.1e-79 298.1 263 60.5
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.9e-77 293.1 279 58.1
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.5e-77 292.7 260 60.8
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 7.4e-77 291.2 264 60.2
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.7e-76 290.0 260 59.6
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 2.2e-76 289.7 260 59.2
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.1e-75 287.3 260 59.2
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 1.4e-75 287.0 238 63.4
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 1.8e-75 286.6 264 59.1
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.8e-75 286.6 310 53.9
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 4.1e-75 285.4 312 53.2
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 5.3e-75 285.0 310 53.5
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 6.9e-75 284.6 304 53.9
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 2.6e-74 282.7 304 53.6
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 4.5e-74 282.0 278 56.1
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 5.9e-74 281.6 265 57.7
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 5.9e-74 281.6 306 53.6
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 1.0e-73 280.8 265 57.7
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.0e-73 280.8 265 57.7
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 6.5e-73 278.1 278 55.8
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.9e-72 276.6 210 69.5
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 5.5e-72 275.0 265 55.5
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.2e-71 273.9 265 55.5
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 7.9e-71 271.2 264 55.3
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.4e-70 270.4 289 51.6
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.8e-70 270.0 289 51.2
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.8e-70 270.0 289 51.2
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 1.8e-70 270.0 289 51.2
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.3e-70 269.6 258 56.6
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.1e-69 267.3 265 54.0
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.0e-69 266.5 264 53.4
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.0e-69 266.5 265 54.7
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 2.0e-69 266.5 260 55.4
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.4e-69 265.4 245 57.1
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 9.7e-69 264.2 260 55.4
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 9.7e-69 264.2 265 53.6
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 1.7e-68 263.5 264 53.0
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.7e-68 263.5 253 56.9
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.7e-68 263.5 259 54.8
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-68 263.1 266 56.0
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 2.2e-68 263.1 248 55.6
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 3.7e-68 262.3 263 54.4
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 4.8e-68 261.9 265 53.2
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 6.3e-68 261.5 260 54.2
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.4e-67 260.4 256 55.5
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 1.4e-67 260.4 260 54.6
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 1.8e-67 260.0 227 59.5
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.8e-67 260.0 259 54.1
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.4e-67 259.6 259 54.4
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 5.3e-67 258.5 259 53.3
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 7.0e-67 258.1 349 47.3
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 7.0e-67 258.1 191 68.6
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 7.0e-67 258.1 259 53.7
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 9.1e-67 257.7 263 52.5
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.2e-66 257.3 260 53.5
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 1.2e-66 257.3 263 52.1
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.5e-66 256.9 285 50.9
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.5e-66 256.9 272 52.2
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.5e-66 256.9 259 53.3
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.0e-66 256.5 264 52.7
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 2.0e-66 256.5 259 54.1
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.0e-66 256.5 265 52.5
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.0e-66 256.5 274 51.8
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 2.6e-66 256.1 265 52.5
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.4e-66 255.8 270 51.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 4.5e-66 255.4 259 53.7
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 4.5e-66 255.4 265 52.5
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 5.9e-66 255.0 259 54.8
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.3e-65 253.8 263 52.1
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.3e-65 253.8 263 52.1
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 2.2e-65 253.1 255 54.1
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 2.9e-65 252.7 264 51.9
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 3.8e-65 252.3 251 54.6
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 6.5e-65 251.5 264 51.9
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 6.5e-65 251.5 264 51.9
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 6.5e-65 251.5 258 53.1
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 6.5e-65 251.5 255 53.3
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 8.5e-65 251.1 259 52.9
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 8.5e-65 251.1 264 49.2
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 8.5e-65 251.1 263 51.3
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.1e-64 250.8 259 52.9
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 1.4e-64 250.4 260 52.3
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 2.5e-64 249.6 263 52.5
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 2.5e-64 249.6 264 50.4
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 5.5e-64 248.4 259 51.7
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 5.5e-64 248.4 259 51.4
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 9.4e-64 247.7 248 52.8
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.2e-63 247.3 254 52.8
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 1.6e-63 246.9 251 53.0
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.6e-63 246.9 260 52.3
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.1e-63 246.5 251 53.0
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.7e-63 246.1 135 88.1
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 2.7e-63 246.1 264 51.1
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.0e-62 244.2 247 53.0
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 1.4e-62 243.8 259 52.5
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.8e-62 243.4 264 50.4
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 3.9e-62 242.3 252 49.6
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.6e-61 239.6 259 50.2
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 9.7e-61 237.7 259 49.8
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 1.3e-60 237.3 214 57.9
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.7e-60 235.7 259 48.6
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.4e-59 233.8 258 48.4
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.8e-59 233.4 258 48.1
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 3.1e-59 232.6 260 46.5
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.1e-59 232.3 250 50.8
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 5.3e-59 231.9 254 53.1
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 5.3e-59 231.9 302 46.0
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.6e-58 230.3 260 46.9
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.0e-58 229.9 256 49.2
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 4.5e-58 228.8 252 48.4
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 5.0e-57 225.3 289 47.4
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 6.5e-57 224.9 289 46.0
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.1e-56 224.2 255 48.2
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.1e-56 224.2 228 53.1
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.5e-56 223.8 263 47.9
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 2.5e-56 223.0 260 48.5
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 4.2e-56 222.2 271 46.1
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.6e-55 220.3 250 50.4
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.6e-55 220.3 255 47.1
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 8.8e-54 214.5 262 49.2
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 8.8e-54 214.5 225 49.8
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 7.5e-53 211.5 273 46.9
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.7e-52 210.3 259 44.4
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.2e-52 209.9 204 54.4
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 2.8e-52 209.5 237 47.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.8e-52 209.5 220 53.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.7e-52 209.1 255 46.3
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-50 203.8 288 43.1
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.6e-50 203.8 294 38.8
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.7e-50 203.0 185 57.8
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.7e-49 200.3 255 42.7
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 6.5e-49 198.4 235 43.8
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 2.5e-48 196.4 296 44.6
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 9.4e-48 194.5 155 65.2
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 9.4e-48 194.5 248 48.4
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 2.3e-46 189.9 177 58.2
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 2.6e-45 186.4 194 51.5
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 2.2e-44 183.3 256 44.5
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 8.3e-44 181.4 224 49.6
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.0e-42 176.8 216 46.3
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.5e-40 168.7 159 54.7
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 5.7e-37 158.7 190 44.2
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.8e-36 156.4 130 62.3
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 5.4e-35 152.1 123 63.4
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 4.5e-34 149.1 253 37.2
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 5.9e-34 148.7 117 65.8
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-31 140.2 138 55.1
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.5e-29 134.0 233 35.6
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 9.8e-29 131.3 250 34.8
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.3e-25 120.9 86 69.8
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.6e-23 114.0 154 41.6
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.6e-23 112.8 138 42.0
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 6.2e-23 112.1 150 40.7
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.5e-21 107.5 138 41.3
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 2.9e-20 103.2 256 29.3
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 3.2e-19 99.8 219 33.3
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 4.6e-18 95.9 129 47.3
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 4.6e-18 95.9 156 39.1
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 7.8e-18 95.1 92 52.2
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 5.8e-13 79.0 52 65.4
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.3e-12 75.1 52 73.1
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 8.3e-12 75.1 52 73.1
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.9e-11 73.9 52 71.2
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 3.2e-11 73.2 150 32.0
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.4e-11 72.4 52 69.2
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 3.5e-10 69.7 42 71.4
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 6.0e-10 68.9 93 39.8
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 3.3e-08 63.2 61 47.5
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 2.8e-07 60.1 45 66.7


User provided reference genes

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