Gene: Lj3A882G53

General Information

Structural Information

  • Species Lonicera japonica
  • Gene Identifier Lj3A882G53
  • Transcript Identifier Lj3A882G53.1
  • Gene Type Coding gene
  • Location GWHAAZE00000003 : 88230040-88245062 : positive

Gene Family Information

  • ID HOM05D003576
  • #Genes/#Species 191/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Lj3A882G53.1
  • Accession GWHGAAZE012596
  • Accession GWHTAAZE012610

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031087
ISO
PLAZA Integrative Orthologydeadenylation-independent decapping of nuclear-transcribed mRNA AT5G13570
GO:0006402
ISO
PLAZA Integrative OrthologymRNA catabolic process AT5G13570
GO:0019048
ISO
PLAZA Integrative Orthologymodulation by virus of host process AT5G13570
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT5G13570
GO:0010072
ISO
PLAZA Integrative Orthologyprimary shoot apical meristem specification AT5G13570
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT5G13570
GO:0000290
IEA
InterProdeadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G13570
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G13570
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT5G13570
GO:0000287
ISO
PLAZA Integrative Orthologymagnesium ion binding AT5G13570
GO:0050072
IEA
InterProm7G(5')pppN diphosphatase activity
GO:0030145
IEA
InterPromanganese ion binding
GO:0016787
IEA
InterProhydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G13570
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G13570

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036189 mRNA decapping protein 2, Box A domain superfamily
IPR015797 NUDIX hydrolase-like domain superfamily
IPR000086 NUDIX hydrolase domain
IPR007722 mRNA decapping protein 2, Box A domain
IPR044099 mRNA decapping enzyme 2 , NUDIX hydrolase domain
Mapman id Description
16.4.2.2.2 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.hydrolase component DCP2