Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 3560.4 1857 100.0
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3229.9 1861 90.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3228.0 1862 89.6
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 3228.0 1862 89.6
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3226.4 1867 90.1
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 3214.9 1870 90.4
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 3205.6 1858 89.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3191.0 1863 89.2
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 3191.0 1863 89.2
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 3160.2 1870 89.2
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 3156.3 1861 88.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 3121.3 1861 87.3
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 3092.8 1861 86.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 2889.8 1880 82.1
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2692.9 1871 75.0
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2239.2 1828 64.1
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2237.6 1836 64.3
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2233.4 1816 64.4
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2226.4 1814 64.5
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2208.3 1832 63.7
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2207.6 1820 64.5
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2203.7 1838 63.5
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2203.3 1827 64.4
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2189.8 1840 63.0
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2189.8 1826 63.5
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2186.0 1837 62.9
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2176.4 1854 63.3
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2169.0 1809 63.2
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2155.9 1825 63.2
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2152.1 1826 62.7
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2151.3 1814 63.1
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2150.2 1825 62.3
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2145.2 1788 62.9
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2139.8 1824 63.1
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2119.4 1710 66.0
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2118.2 1820 62.4
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2100.9 1816 61.0
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2100.1 1827 62.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2081.2 1823 60.3
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2075.8 1824 61.7
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2073.5 1824 61.6
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2073.1 1824 61.7
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2065.0 1826 61.4
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2064.3 1874 58.6
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2060.0 1823 60.8
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2056.6 1818 60.1
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2053.9 1826 61.3
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2051.9 1881 58.9
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2042.3 1843 59.8
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2030.4 1840 60.0
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2027.3 1823 59.2
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2023.4 1891 57.9
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2021.5 1878 58.6
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2019.2 1824 60.6
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2015.7 1838 59.4
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2006.9 1806 59.9
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1998.0 1649 63.6
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1992.6 1820 59.5
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1984.9 1600 64.1
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1978.0 1813 58.8
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1968.0 1807 58.7
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1967.2 1813 58.6
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1951.0 1818 57.9
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1943.7 1796 58.6
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1934.5 1824 57.6
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1923.3 1809 56.9
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1922.1 1724 60.2
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1921.4 1829 57.0
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1919.1 1820 56.7
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1917.1 1497 66.2
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1916.4 1830 57.2
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1911.0 1825 56.8
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1900.9 1811 56.3
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1900.2 1832 57.4
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1896.3 1888 56.2
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1885.5 1417 68.2
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1874.4 1813 56.6
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1868.6 1866 55.3
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1864.7 1458 65.6
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1848.2 1809 56.1
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1832.0 1558 61.9
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1831.2 1666 58.6
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1809.7 1632 58.6
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1784.6 1884 53.6
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1773.1 1868 53.1
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1762.7 1530 61.4
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1743.0 1601 58.5
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1737.6 1755 54.1
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1689.5 1310 66.0
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1654.8 1647 54.6
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1642.1 1494 57.8
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1587.8 1811 49.7
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1580.8 1608 53.9
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1389.0 1439 53.9
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1365.5 1835 44.5
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1288.1 1811 43.2
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1280.8 1810 42.1
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1259.6 1789 41.0
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1256.9 951 67.9
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1168.7 1264 53.2
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 0.0e+00 1157.9 640 90.9
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1154.8 1055 59.1
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.1e-300 1037.7 956 57.1
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.9e-292 1008.4 1128 50.4
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.7e-290 1003.8 1536 39.6
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 3.6e-280 969.5 931 57.0
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.7e-229 800.0 852 53.2
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 5.4e-212 743.0 703 58.9
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.5e-179 634.0 508 62.8
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.5e-179 634.0 930 43.8
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 7.9e-171 606.3 524 59.2
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 1.1e-151 542.7 435 65.3
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.5e-148 531.6 758 43.4
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.5e-142 511.1 507 54.8
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 9.1e-135 486.5 466 56.4
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.8e-131 474.9 520 48.8
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 5.4e-127 460.7 558 47.7
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 1.8e-122 445.7 475 52.2
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.4e-119 436.0 477 50.9
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 8.9e-114 416.8 492 50.8
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 6.6e-101 374.0 267 70.8
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 7.8e-94 350.5 370 49.7
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.5e-92 345.5 282 61.0
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.3e-92 345.1 356 51.7
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.1e-91 342.4 333 53.8
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.4e-82 313.2 427 46.1
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 9.0e-82 310.5 266 62.0
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 2.7e-70 272.3 1767 22.9
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 1.7e-56 226.5 120 95.0
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 2.3e-53 216.1 137 78.8
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 3.7e-51 208.8 319 39.8
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.2e-48 199.5 190 56.8
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.6e-44 186.0 403 31.8
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.6e-38 166.8 175 48.6
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 2.2e-35 156.4 91 85.7
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.6e-33 149.4 444 29.3
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.5e-33 149.1 230 36.5
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 2.5e-31 142.9 79 89.9
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.6e-30 139.0 260 35.8
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 2.6e-28 132.9 70 92.9
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 2.4e-26 126.3 165 49.1
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 9.1e-26 124.4 92 65.2
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.1e-23 117.5 117 50.4
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 7.2e-23 114.8 78 67.9
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 9.4e-23 114.4 90 63.3
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.2e-22 114.0 98 58.2
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 8.0e-22 111.3 90 62.2
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.4e-21 110.5 115 53.9
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 3.1e-18 99.4 88 58.0
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 7.0e-18 98.2 88 60.2
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 9.1e-18 97.8 67 70.1
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.0e-17 96.7 90 52.2
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 2.3e-16 93.2 191 35.1
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.9e-15 90.1 107 48.6
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 5.6e-15 88.6 107 47.7
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.1e-14 86.7 61 63.9
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 2.8e-14 86.3 75 58.7
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.6e-14 85.9 59 72.9
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 4.0e-13 82.4 116 42.2
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 6.8e-13 81.6 83 51.8
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.0e-12 80.1 73 54.8
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 5.7e-12 78.6 138 37.7
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 5.7e-12 78.6 73 54.8
C06p42400 Brassica napus HOM05D011400 ORTHO05D014089 9.8e-12 77.8 50 72.0
C06p42460 Brassica napus HOM05D011400 ORTHO05D014089 9.8e-12 77.8 50 72.0
C03p83880 Brassica napus HOM05D006735 ORTHO05D009558 1.1e-10 74.3 37 86.5
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 1.1e-10 74.3 107 41.1
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 2.4e-10 73.2 53 64.2
BcaC08g46185 Brassica carinata HOM05D011400 ORTHO05D014089 5.4e-10 72.0 36 86.1
C09p14870 Brassica napus HOM05D011400 ORTHO05D014089 7.0e-10 71.6 74 55.4
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 8.6e-08 64.7 70 50.0
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 8.6e-08 64.7 70 50.0
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 2.5e-07 63.2 153 28.8
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.3e-07 62.8 70 48.6
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 7.3e-07 61.6 117 34.2
Ciclev10023419m.g Citrus clementina HOM05D000366 ORTHO05D000437 4.7e-06 58.9 58 43.1
Cc08_g11640 Coffea canephora HOM05D000366 ORTHO05D000437 4.7e-06 58.9 75 30.7
Ciclev10024011m.g Citrus clementina HOM05D000366 ORTHO05D000437 6.2e-06 58.5 58 43.1
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 8.0e-06 58.2 81 40.7


User provided reference genes

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