Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 4.8e-248 860.9 501 100.0
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 2.6e-201 705.7 496 84.7
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 1.4e-199 699.9 496 84.3
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 4.1e-199 698.4 496 83.9
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 7.0e-199 697.6 497 84.7
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 7.8e-198 694.1 499 85.0
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 8.6e-197 690.6 504 84.1
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 4.6e-190 668.3 497 82.5
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 3.3e-188 662.1 502 81.7
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 2.1e-187 659.4 505 77.4
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 6.2e-187 657.9 506 78.9
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 3.4e-185 652.1 503 80.9
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 1.7e-181 639.8 472 78.2
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 7.1e-175 617.8 465 80.6
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 2.1e-174 616.3 470 73.4
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 3.5e-174 615.5 466 81.5
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 1.5e-161 573.5 446 76.0
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 5.5e-151 538.5 503 58.8
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.1e-150 536.6 509 63.7
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 3.4e-145 519.2 501 59.9
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 4.3e-140 502.3 512 60.0
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 4.8e-139 498.8 523 61.4
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 5.3e-138 495.4 508 59.8
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 6.9e-138 495.0 519 58.4
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 7.7e-137 491.5 522 58.8
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 2.9e-136 489.6 522 58.8
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 3.2e-135 486.1 525 58.1
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 1.4e-133 480.7 519 57.0
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 6.7e-133 478.4 511 56.8
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 1.5e-132 477.2 520 59.6
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 3.3e-132 476.1 519 57.8
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 3.3e-132 476.1 501 60.5
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 1.7e-131 473.8 513 57.7
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 2.8e-131 473.0 541 58.0
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 4.8e-131 472.2 524 55.9
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 6.3e-131 471.9 525 55.6
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 1.1e-130 471.1 499 59.7
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 1.5e-129 467.2 517 56.3
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 2.2e-128 463.4 518 56.9
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 5.0e-128 462.2 527 57.1
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 8.5e-128 461.5 508 56.5
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 2.5e-127 459.9 504 56.7
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 4.2e-127 459.1 499 58.1
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 4.2e-127 459.1 434 63.8
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 5.5e-127 458.8 521 56.8
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 2.1e-126 456.8 515 55.3
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 2.7e-126 456.4 515 54.2
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 4.7e-126 455.7 508 58.3
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 6.1e-126 455.3 492 58.7
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 6.1e-126 455.3 383 66.1
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 2.0e-124 450.3 508 52.4
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 2.0e-124 450.3 513 56.3
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 2.2e-123 446.8 493 56.4
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 8.2e-123 444.9 508 53.7
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 1.4e-122 444.1 502 56.0
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 1.8e-122 443.7 440 58.6
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 2.4e-122 443.4 382 63.1
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.4e-122 443.4 517 54.4
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 3.1e-122 443.0 517 54.5
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 3.1e-122 443.0 510 52.5
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 7.0e-122 441.8 528 53.4
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 9.1e-122 441.4 472 58.7
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 3.5e-121 439.5 517 54.2
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 4.5e-121 439.1 372 65.9
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 7.7e-121 438.3 507 54.4
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 1.3e-120 437.6 509 57.0
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.2e-120 436.8 508 53.9
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 2.9e-120 436.4 510 52.9
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 3.8e-120 436.0 383 64.2
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 3.8e-120 436.0 503 54.9
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 6.5e-120 435.3 383 63.7
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 1.1e-119 434.5 482 59.3
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 2.5e-119 433.3 516 52.9
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 2.5e-119 433.3 521 54.3
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 5.5e-119 432.2 519 53.2
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 7.2e-119 431.8 372 64.5
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 9.4e-119 431.4 534 52.2
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 1.2e-118 431.0 386 62.4
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 2.7e-118 429.9 433 58.7
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 2.7e-118 429.9 373 62.7
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 3.6e-118 429.5 596 44.6
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 4.7e-118 429.1 432 58.8
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 1.0e-117 427.9 432 60.0
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 1.0e-117 427.9 504 54.2
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.4e-117 427.6 498 56.0
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 2.3e-117 426.8 520 55.4
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 4.0e-117 426.0 525 52.6
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 6.7e-117 425.2 508 54.1
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 8.8e-117 424.9 372 64.0
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 2.6e-116 423.3 521 54.7
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 3.3e-116 422.9 521 54.5
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 5.7e-116 422.2 510 51.4
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 5.7e-116 422.2 371 65.2
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 4.8e-115 419.1 382 61.0
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 2.4e-114 416.8 550 49.1
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 1.6e-113 414.1 504 54.4
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 2.2e-112 410.2 384 60.2
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 5.5e-111 405.6 497 48.5
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 1.0e-109 401.4 498 52.8
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.0e-108 397.1 468 53.2
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 2.6e-108 396.7 490 52.0
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 2.8e-107 393.3 428 57.5
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 8.3e-107 391.7 519 50.3
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 2.7e-105 386.7 375 58.7
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 4.5e-105 386.0 353 61.5
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.1e-103 381.3 536 45.5
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.1e-103 381.3 393 53.2
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 2.9e-96 356.7 511 48.7
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 2.5e-95 353.6 495 43.0
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 2.9e-91 340.1 414 52.2
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 8.3e-91 338.6 392 49.5
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.4e-90 337.8 523 47.2
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.5e-87 327.0 454 48.0
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 1.8e-85 320.9 266 65.4
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 1.7e-83 314.3 530 44.0
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 5.4e-82 309.3 493 41.6
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 5.8e-76 289.3 248 64.1
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 4.6e-73 279.6 344 53.2
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 2.9e-67 260.4 552 42.4
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 3.0e-64 250.4 421 42.8
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 6.6e-64 249.2 256 49.6
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 2.0e-52 211.1 270 49.6
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 4.5e-52 209.9 185 54.6
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 5.4e-50 203.0 508 31.7
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 6.5e-43 179.5 468 35.5
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 1.1e-42 178.7 226 42.9
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 9.0e-37 159.1 116 70.7
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 1.9e-34 151.4 359 30.4
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 5.5e-34 149.8 141 57.4
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 2.4e-29 134.4 155 50.3
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 2.4e-29 134.4 164 50.0
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 1.5e-28 131.7 134 56.0
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 7.7e-28 129.4 93 71.0
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 6.3e-22 109.8 555 24.9
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 2.6e-20 104.4 141 44.0
BcaB06g25383 Brassica carinata HOM05D005639 ORTHO05D093847 3.5e-12 77.4 93 48.4


User provided reference genes

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